Protein

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UniProt accession
A0A385II63 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNELFSQGGKGSTGILTNKQAIARKFGVKQNEVVYFSVGVDLGGYKVIYDKTTQRAYSLPVLPVGTTAVSLNEQAILVHSAGTVDLGELGKSRGEYTTLPGTFSTGSIVNTKNDILVYNDTGYTYQGALPVTVAPGSSPVGDANWVAISDAYLKEELLNKYIHYVTPQVFGAMGDGVTDDTEAIQAAMDYCQLNRTKLVIPSKKYIITKPLLYRNLGFYNYEIEGQGGNAIIELTTLAKTGITEPDAYGVDVNVNAAIVVLTDTNQSKYARISGIRFTTTVNADYGIYFSITENSYVSDCLFEGYKFGIFDKGSWIQRISRCIARNCTDTGFYIQDGTSTYIKECYVDYANRGYYLASGYSSIIDCACDHTTRWSYVFGGGSGDNATTDTRSISMHNCGSENTGTGSAIYIDGRVALGISNYHAGNYPPYQTANTPYLVDVSSKGSDSQITMSNVRCVNFSYLINDASSSNNYFDLTNVTCRSTLTGKYSLASGTRVLERTKEGGVRIITNTDLTGIGIVAGDIVDSLSDNTTLSGLRNGQFIYRKGISITRSTGSAGSTEVTLPINLLDYRVAVTFNGGIGALQSIAPVFSVTNQTPSGFTVNCASSRGDEAWTTLGADIIVYGLKQ
Physico‐chemical
properties
protein length:628 AA
molecular weight: 67654,80150 Da
isoelectric point:5,34948
aromaticity:0,10191
hydropathy:-0,12484

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–94
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050 DC_2316
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50 DC_1603
IPR012334
STR
168–427
IPR012334
IPR024535
ENZ
170–353
IPR024535
A0A385II63
1 628
Architecture
ATT
STR
RBD
ATT 1-159 | STR 160-474 | RBD 480-628
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A385II63
1 628
Domain Start End Length (AA) Confidence
N-terminal 1 180 180 0,9911
Central domain 181 519 340 0,9809
C-terminal 520 628 108 0,9479
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-180
Central
181-519
C-terminal
520-628

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PGN829.1
[NCBI] 		2315696 Uroviricota > Caudoviricetes > Schitoviridae > Gamaleyavirus > Gamaleyavirus Pgn8291
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXY82585.1 [NCBI]
Genbank nucleotide accession
MH733496 [NCBI]
CDS location
range 31164 -> 33050
strand +
CDS
ATGAACGAATTATTCTCACAAGGTGGTAAAGGCTCTACTGGTATTCTTACCAATAAACAAGCCATTGCCCGTAAGTTTGGTGTTAAGCAGAATGAAGTAGTCTACTTTTCTGTAGGTGTAGACTTGGGGGGTTACAAAGTCATTTATGACAAGACTACTCAGCGTGCTTACTCTTTGCCCGTACTCCCGGTAGGAACCACTGCTGTAAGCCTGAATGAACAAGCAATCCTGGTTCATTCAGCAGGTACTGTTGATTTGGGGGAACTTGGGAAAAGCAGGGGGGAGTATACTACCCTACCTGGCACGTTCTCCACCGGTTCCATAGTAAATACTAAGAATGACATACTCGTTTACAATGATACTGGATACACCTACCAGGGTGCACTACCCGTTACTGTAGCTCCTGGATCATCCCCTGTTGGGGATGCTAATTGGGTTGCTATATCCGACGCATACCTGAAAGAGGAACTACTTAATAAGTATATACACTATGTTACCCCGCAAGTATTTGGTGCTATGGGGGATGGTGTTACTGATGATACTGAAGCCATTCAAGCAGCAATGGATTACTGTCAACTGAATCGAACTAAGTTGGTGATTCCATCCAAGAAGTACATTATTACTAAACCCTTGTTGTATCGCAATTTAGGCTTTTATAACTATGAAATTGAAGGACAAGGTGGTAATGCAATTATTGAATTAACTACCTTAGCTAAGACAGGTATAACTGAGCCAGATGCTTACGGGGTGGATGTTAACGTAAATGCTGCTATTGTTGTATTAACAGATACTAATCAGAGTAAGTATGCTCGTATTTCAGGTATTCGCTTTACAACTACAGTCAATGCTGACTACGGTATCTATTTTAGTATAACGGAGAACAGTTACGTATCAGATTGCCTCTTTGAAGGTTATAAGTTTGGTATATTTGATAAAGGTTCATGGATTCAACGTATATCCCGGTGTATTGCTCGTAACTGTACGGATACCGGGTTCTATATCCAAGACGGTACTAGTACCTACATAAAAGAATGCTATGTTGATTATGCTAATCGTGGTTACTACTTAGCTAGTGGCTATAGTTCGATTATTGATTGTGCATGCGACCATACTACCCGCTGGAGCTATGTATTTGGCGGTGGTTCCGGTGATAACGCTACTACAGATACCCGAAGCATTAGTATGCATAATTGTGGTTCTGAAAATACAGGAACGGGTTCTGCTATCTACATAGATGGTAGGGTTGCATTAGGTATTTCTAATTATCATGCGGGTAATTACCCTCCATACCAAACAGCCAATACCCCCTATCTTGTAGATGTTTCAAGTAAGGGTTCAGATTCTCAAATTACTATGAGTAATGTGCGATGTGTTAACTTCTCTTACCTTATTAATGATGCCAGCAGCTCTAATAACTATTTTGACCTTACTAACGTTACCTGTCGTAGTACATTAACTGGTAAATACAGTCTGGCTTCTGGAACCAGGGTACTAGAAAGAACCAAGGAAGGTGGTGTACGAATCATTACTAATACTGATTTAACTGGTATTGGTATTGTTGCTGGGGATATTGTGGACTCACTCTCCGATAACACCACTTTATCTGGTTTGCGTAATGGGCAATTCATCTATCGTAAGGGTATATCTATCACCCGCTCTACTGGTTCCGCTGGTAGTACTGAAGTAACACTACCTATTAACTTACTGGATTATCGTGTAGCCGTAACCTTTAATGGGGGTATTGGTGCATTGCAGAGTATTGCCCCTGTATTTAGCGTTACTAACCAAACCCCTTCTGGGTTTACGGTTAACTGCGCAAGTTCTCGTGGTGACGAAGCGTGGACTACATTAGGTGCAGATATTATTGTATATGGCTTGAAGCAGTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
78527d2b0c000efd08ba9ef5a8caa074b75ad07de7ce327a603e197504f0efaf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7621
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50