Protein

View in Explore
Genbank accession
YP_009226131.1 [GenBank]
Protein name
lytic tail fiber
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MAQEITWRNIGATVSPGSASSMSAGTTGVQQALGALGDIISRQQEMNVNNAKLQREANTQSYLDQVAASTLEQLSNADYRSGLEAQRDAMGMNLDRAATRDAITKQISAQQNQAAATQKFDDMQAEVGQRGVVDQLRTLAAEGRTGEVNQILAEQQLINEGEIRKELTGVQDAIQNRQYRAAGEQRAQAAANRAAEAHSLSMAAGRENLAFTREQRDELRRDRDEAKLVSGTIATTFQDYDESRQAQSEIMRIVGKEVGMPTDDQGMPDMSRASQDQLDAFSNALNEAGVQANTSPTERRNAALKSLVDAGVSSKGIAQAKQEMELRESLEGLAPQDRTKVEATIGAVNAELDTLQRTATEDYEREVARNPFVEPDKDPLGSVNKIVDKAVKSGFGWEGDRQDLNNMLVDFATNGIKLPDGRTAVVPSKLLEQAFNTTNTWLFKNASDVEKRIIELMTTDGMTQMREDAPTIRENFLKTVSDIANQKRSNAVKVTRSAEREKGVTMDPTDDLTFALRGRKR
Physico‐chemical
properties
protein length:521 AA
molecular weight: 57118,73670 Da
isoelectric point:4,99094
aromaticity:0,03647
hydropathy:-0,68580

Domains

Domains [InterPro]
DC_0193
STR
1–521
DC_0193
Coil
Unmapped
202–229
Coil
YP_009226131.1
1 521
Architecture
STR
STR 1-521
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage YH30
[NCBI] 		1636189 Uroviricota > Caudoviricetes > Schitoviridae > Litunavirus > Litunavirus PA26
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009226131.1 [NCBI]
Genbank nucleotide accession
NC_029101.1 [NCBI]
CDS location
range 21146 -> 22711
strand +
CDS
ATGGCCCAAGAGATCACTTGGCGTAATATTGGTGCAACGGTAAGTCCTGGCAGTGCATCTTCGATGTCTGCTGGGACTACCGGTGTCCAACAAGCACTTGGTGCACTGGGTGACATCATCTCCCGTCAACAGGAGATGAACGTCAACAATGCCAAGTTGCAGCGTGAAGCCAACACGCAAAGCTATCTGGACCAGGTGGCAGCATCCACCCTGGAACAACTCAGCAACGCAGACTATCGCAGTGGCTTGGAGGCCCAACGTGATGCGATGGGGATGAACCTGGATCGTGCTGCTACCCGAGATGCGATCACCAAGCAGATCAGTGCTCAGCAGAACCAAGCGGCTGCTACTCAGAAGTTCGACGATATGCAGGCAGAAGTAGGTCAACGAGGTGTCGTAGACCAGCTTCGTACTCTGGCAGCTGAAGGTCGTACTGGTGAAGTCAACCAGATCTTGGCTGAGCAACAGCTGATCAACGAGGGTGAGATCCGCAAGGAACTCACCGGTGTGCAGGATGCTATCCAGAATCGGCAGTACCGTGCAGCTGGTGAACAGCGTGCACAGGCAGCGGCCAACCGGGCAGCTGAAGCACACTCCCTCTCCATGGCTGCTGGCCGGGAGAATCTGGCTTTCACTCGTGAACAGCGTGACGAACTACGCCGTGATCGAGATGAAGCGAAGCTGGTTTCGGGAACCATCGCTACTACCTTCCAGGACTACGATGAGTCCCGTCAGGCACAGAGCGAGATCATGCGAATCGTAGGCAAGGAAGTTGGTATGCCTACTGATGACCAGGGTATGCCTGACATGAGCCGGGCTTCGCAAGACCAGCTTGATGCCTTCAGCAATGCGCTGAACGAAGCTGGTGTGCAAGCCAATACCTCTCCTACCGAGCGACGCAATGCTGCACTCAAGTCTCTCGTGGATGCCGGGGTAAGCTCGAAGGGTATCGCCCAGGCCAAGCAAGAGATGGAACTCCGGGAATCCCTGGAGGGTCTGGCTCCGCAAGATCGGACGAAGGTTGAAGCAACCATCGGTGCGGTTAACGCCGAACTGGATACCCTGCAACGTACAGCTACCGAGGACTACGAACGGGAAGTTGCACGCAACCCGTTTGTCGAGCCTGACAAGGATCCGCTGGGTTCGGTCAACAAGATCGTCGATAAGGCTGTGAAGTCTGGTTTCGGCTGGGAAGGTGACCGCCAGGATCTGAACAACATGCTCGTGGACTTCGCCACCAACGGCATCAAGCTACCGGACGGACGTACTGCTGTGGTTCCGTCGAAGCTGTTGGAACAGGCGTTCAATACCACGAACACTTGGCTGTTCAAGAATGCCAGTGACGTGGAGAAACGGATCATCGAACTCATGACCACTGATGGCATGACTCAGATGCGAGAAGACGCTCCGACCATTCGGGAAAACTTCCTGAAAACCGTGTCGGACATCGCCAACCAAAAACGGTCAAATGCCGTTAAGGTAACTCGCTCGGCAGAACGGGAAAAGGGTGTTACCATGGACCCAACCGATGATCTAACTTTTGCACTACGAGGGAGGAAACGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b2fcee349ed87a8884f9cc97f158e97fd29dd8b52fce1becf50f69eb10e8c45d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7239
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Therapeutic effect of Pseudomonas aeruginosa phage YH30 on mink hemorrhagic pneumonia Gu,J., Li,X., Yang,M., Du,C., Cui,Z., Gong,P., Xia,F., Song,J., Zhang,L., Li,J., Yu,C., Sun,C., Feng,X., Lei,L. and Han,W. 2016 27283850 GenBank