Protein

View in Explore

Genbank accession

QPB07571.1 [GenBank]

Protein name

tail fiber protein and host specificity

RBP type

Evidence Phold

Probability 1,00

Protein sequence

MLLTIHDSALKKVAFIDNNKQTTLNFFNDKWTRSLESATSVFEFSVFKKKIQSDTYVEQAYKHLNERAFVSFKYKGRSYLFNVMKTEENEQIIKCYCENLSLELMLEYQEAYKAPKAMTFEEYLKTWGILSVAKLDLGINELTDQRRALQWEGQETSLARLISLARNFDAEIEFETHLKSNSQLDRFVLNVYKAHSAENQGVGRKRNDVVLKYGKNVRSIKRSVDKTQLYNAIKPVGRKEETKETSTKVANPSATQAANSGKKYTGGGLNYAGHPMSAAIVQTILNLCVQYNILPSGMICQLYLESSWGSSYLARVDNNWSGMSGSAQTRPSGVKVTTGSARPANEGGTYFHYASVDDFMKDYAYLLAEQTSGGRKFYGVKGKQNIEEYTKGLFRVGGALYDYAAAGYGHYIALMRDIRGGVNRSNGNILDKLDDLWRQPNNQLSSPSQPVTRVVKADKTIAVINEMKGLQGRTVGSGQCYGLAAWYSMKLGGPGLGGGVTGFSGKVGAGMAAAYIGTDYAWANFGWSVVRPRGTNELKAGSLANIKAHNAFLGTGQYGHVSIIIANNGSTVTVLEQNYAGRQYVTLGTYNAQAYLGAIETLCYPPELKAGKTVEGRTETGSTVDVPVPEIELKEVTVSTTQIVIDPKKKQEWKNEKG

Physico‐chemical properties

protein length:	658 AA
molecular weight:	72701,43210 Da
isoelectric point:	9,17696
aromaticity:	0,10030
hydropathy:	-0,40957

Domains

Domains [InterPro]

DC_0558
ATT
1–392

DC_0558 IPR007921

IPR007119
Unmapped
59–246

IPR007119 IPR002901 IPR038765

IPR010572
ENZ
145–248

IPR010572 IPR002901 IPR007921

DC_1027
STR
325–653

DC_1027

G3DSA:3.90.1720.60
STR
385–604

G3DSA:3.90.1720.60

QPB07571.1

1 658

Architecture

ATT

STR

ATT 1-392 | STR 393-653 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0558	ATT	DC_0558	1	392	Novel HMM	DC_0558	N-terminal	Low	Positional only	70 proteins / 70 hits
IPR007119	Unmapped	-	59	246	InterPro	Phage tail spike protein, N-terminal domain	-	-	-	-
IPR010572	ENZ	DC_0675	145	248	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
IPR002901	ENZ	DC_0048	268	409	InterPro cluster	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain	Central	High	Text match	76 proteins / 112 hits
IPR002901	ENZ	DC_0048	285	399	InterPro cluster	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain	Central	High	Text match	76 proteins / 112 hits
DC_1027	STR	DC_1027	325	653	Novel HMM	DC_1027	Central	Low	Positional only	26 proteins / 26 hits
G3DSA:3.90.1720.60	STR	G3DSA:3.90.1720.60	385	604	Merged direct domain	G3DSA:3.90.1720.60	Central	Low	Positional only	18 proteins / 18 hits
IPR007921	ENZ	DC_0404	455	606	InterPro cluster	CHAP domain	C-terminal	High	Text match	2 proteins / 2 hits
IPR038765	STR	IPR038765	475	590	Merged direct domain	Papain-like cysteine peptidase superfamily	Central	Low	Positional only	7 proteins / 7 hits
IPR007921	ENZ	DC_0404	476	578	InterPro cluster	CHAP domain	C-terminal	High	Text match	2 proteins / 2 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Campylobacter phage CJLB-5 [NCBI]	2781359	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Campylobacter jejuni [NCBI]	197	cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Genbank protein accession

QPB07571.1 [NCBI]

Genbank nucleotide accession

MW057932.1 [NCBI]

CDS location

range 36567 -> 38542
strand +

CDS

ATGCTTTTAACAATCCACGATAGCGCCTTGAAAAAGGTCGCTTTTATCGACAATAACAAGCAGACCACCTTGAATTTCTTCAACGACAAGTGGACACGCTCACTTGAAAGTGCGACATCAGTCTTTGAGTTTTCAGTTTTCAAAAAGAAAATTCAATCTGACACATACGTTGAACAAGCATATAAGCACCTCAATGAGCGGGCTTTTGTCAGCTTCAAGTATAAAGGTCGGTCTTATCTCTTTAACGTGATGAAGACCGAAGAAAATGAGCAGATTATCAAGTGTTACTGCGAAAATCTCAGTCTAGAACTCATGCTCGAGTATCAAGAGGCATACAAAGCCCCTAAAGCCATGACTTTTGAAGAGTATTTGAAAACATGGGGAATTCTCAGTGTCGCTAAACTTGATTTAGGTATCAATGAGCTAACAGACCAGCGCAGAGCGTTGCAGTGGGAGGGACAAGAAACCTCTCTTGCTCGCTTAATCTCCCTGGCTCGTAACTTTGATGCTGAAATCGAGTTTGAAACTCACTTGAAGTCTAATAGCCAGCTTGACCGCTTTGTTTTGAACGTCTATAAAGCACATAGTGCAGAAAATCAAGGTGTCGGACGCAAGCGAAACGATGTTGTGTTGAAGTATGGCAAGAATGTGCGGAGTATTAAGCGGAGCGTTGACAAGACGCAGTTATACAACGCTATCAAGCCAGTTGGACGCAAGGAAGAAACCAAGGAGACATCAACCAAGGTTGCTAATCCGTCAGCTACGCAAGCGGCAAACAGTGGCAAGAAATATACTGGTGGCGGTCTAAACTACGCTGGGCATCCTATGAGTGCTGCTATAGTCCAAACCATCTTAAATCTCTGTGTGCAGTACAACATACTGCCGTCGGGTATGATTTGCCAGCTTTACCTTGAAAGCTCTTGGGGAAGTTCCTATCTTGCTAGGGTTGATAACAACTGGTCTGGCATGTCTGGCTCTGCCCAAACTCGGCCAAGCGGTGTCAAGGTCACAACAGGAAGCGCAAGACCGGCTAACGAGGGCGGAACATACTTCCACTATGCGAGCGTAGACGACTTTATGAAAGACTATGCTTATCTGCTGGCTGAACAGACTAGCGGCGGGCGGAAGTTCTACGGGGTCAAAGGCAAGCAGAACATCGAAGAATACACGAAAGGGCTTTTCCGTGTTGGAGGTGCGCTATATGACTATGCGGCCGCTGGATATGGCCACTATATCGCTCTCATGCGAGATATCAGAGGTGGGGTCAATCGCTCTAATGGCAATATACTAGACAAGCTAGATGATCTCTGGAGACAGCCTAACAATCAATTAAGCAGCCCTAGCCAACCAGTGACAAGAGTAGTCAAAGCCGATAAAACAATCGCTGTTATCAACGAAATGAAAGGACTACAAGGCCGGACAGTCGGTAGCGGCCAATGTTATGGCTTAGCTGCTTGGTATTCCATGAAGTTAGGCGGCCCTGGTCTTGGCGGTGGCGTAACTGGTTTTTCTGGAAAAGTCGGTGCTGGTATGGCTGCGGCTTATATCGGAACGGACTACGCTTGGGCTAATTTTGGTTGGTCTGTTGTCCGTCCTCGTGGGACTAATGAGCTGAAAGCCGGCTCTTTGGCGAACATCAAAGCTCATAACGCTTTCCTAGGAACTGGACAGTATGGCCACGTTTCAATCATTATTGCTAATAACGGCAGTACAGTGACGGTACTTGAGCAAAACTATGCTGGTCGTCAGTATGTGACTCTTGGGACTTATAATGCTCAGGCTTATTTGGGAGCCATTGAGACGCTTTGTTATCCACCGGAACTAAAAGCCGGCAAGACGGTTGAGGGTAGGACAGAAACAGGCAGCACAGTCGATGTACCAGTACCAGAGATAGAACTTAAAGAAGTAACCGTCAGCACCACGCAGATTGTCATAGACCCCAAGAAAAAGCAAGAATGGAAGAATGAAAAAGGCGA

Genome Context

Tertiary structure

PDB ID

80b8afa8e37cf3e9747575ba38ac5b88df07b5f3968da30f0043eac7109a55b5

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,7992

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Bacteriophages are an effective tool to reduce Campylobacter contamination in foods	Vikram,A., Woolston,J. and Sulakvelidze,A.	2017-11-23	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature