Protein

View in Explore
Genbank accession
QBX24894.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSFRGVTATYNGVDLSDYWEYITDIRRDAGNEDNLVTEDTPRLGEELMRISRGAKIIEVEFTIWSDDRNKVKRQLAKIFRVDSPKKLIFSDEPDKYYWAIKSGKIEMREDILKRSTGTITFFVEDGVAHSTTYKRYDNPTVSGNKITFEIDNEGSENAYPIIKIKHNSENGYIGVVNSTGALEVGNKQEVDGEMAQKNVTLHKNAGGDFSDWVDGTQNFENPHKIVNTRMTSDKAFGGRLGVLPDSFLTSGVAGSLQYGAVKELPLAETAKNWYIWARAWFETGLMGQTGAWCLTVIDEEDHLIAGMAIEKTDASGNTAQIRFLLGDGNGGSRVMQTINFTPCLWFPPNPYGSEGRQENKDANMFDLLKEGDTIKYYWYGSSFRYSDARIRDKNAKKVQFFVGQYTGRNVTDRMVSMHSINYFTFEKLHVDYWKDVPNRYPMGSNVVLSSEDVSIVVDGLNRQMDFVYGSKFIEIPPGKSTLEIYTSDWCKKAPEVTVEFEERWL
Physico‐chemical
properties
protein length:505 AA
molecular weight: 57343,64420 Da
isoelectric point:5,25138
aromaticity:0,11683
hydropathy:-0,52634

Domains

Domains [InterPro]
DC_0420
STR
1–505
DC_0420
G3DSA:2.40.30.200
ATT
4–129
G3DSA:2.40.30.200
IPR006520
Unmapped
9–129
IPR006520
IPR008841
STR
40–122
IPR008841
QBX24894.1
1 505
Architecture
ATT
STR
ATT 1-129 | STR 130-505
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX24894.1
1 505
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,8892
Central domain 194 392 200 0,1857
C-terminal 393 505 112 0,5508
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-392
C-terminal
393-505

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan214
[NCBI] 		2548050 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus equinus
[NCBI] 		1335 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX24894.1 [NCBI]
Genbank nucleotide accession
MK448876.1 [NCBI]
CDS location
range 33556 -> 35073
strand +
CDS
TTGAGTTTTAGAGGTGTAACGGCGACTTATAATGGTGTTGATTTATCAGACTATTGGGAGTATATCACCGATATTCGCCGTGATGCAGGAAATGAAGATAATCTTGTGACAGAGGATACTCCTAGATTAGGTGAAGAGCTTATGCGTATTTCTCGAGGCGCTAAGATTATCGAAGTTGAGTTTACTATTTGGTCAGATGACAGAAACAAAGTAAAACGTCAGCTCGCTAAAATTTTTAGGGTTGATTCACCTAAGAAACTAATCTTTTCTGATGAACCTGATAAGTATTATTGGGCAATAAAATCTGGAAAGATTGAGATGCGTGAAGATATTCTTAAACGTTCTACTGGGACAATTACTTTTTTTGTTGAAGATGGTGTTGCTCACTCGACAACTTATAAACGATACGATAATCCAACTGTATCTGGAAATAAAATCACTTTTGAGATTGATAATGAGGGGAGTGAGAATGCTTATCCGATTATTAAAATCAAACATAATTCCGAGAATGGTTACATCGGCGTTGTAAATAGTACAGGTGCTCTTGAAGTAGGTAACAAACAAGAAGTAGATGGGGAGATGGCTCAAAAAAATGTCACTCTTCATAAAAATGCTGGTGGTGACTTTTCTGATTGGGTGGATGGCACACAGAATTTTGAAAACCCACATAAGATTGTCAACACAAGGATGACTTCTGATAAAGCTTTTGGTGGGCGTTTAGGTGTGCTACCTGATAGTTTTCTAACTAGTGGTGTAGCAGGTAGTCTTCAGTATGGTGCGGTAAAAGAATTACCGCTTGCTGAGACTGCTAAGAACTGGTATATCTGGGCAAGGGCTTGGTTTGAAACAGGACTGATGGGACAAACAGGCGCTTGGTGTTTGACTGTCATCGATGAAGAAGACCATCTTATTGCAGGTATGGCGATTGAAAAAACAGATGCTTCTGGGAATACCGCTCAGATTCGTTTCCTTTTAGGGGATGGTAACGGCGGTAGTCGAGTAATGCAAACCATTAATTTCACGCCGTGCCTATGGTTCCCACCTAACCCATATGGTTCTGAGGGACGACAAGAAAATAAAGATGCTAACATGTTTGACTTGTTAAAAGAAGGAGACACGATTAAATATTATTGGTATGGTTCTAGTTTCCGCTACTCAGATGCTAGGATTAGGGACAAAAATGCTAAGAAGGTTCAATTCTTTGTTGGTCAATATACTGGTCGTAATGTAACTGACCGCATGGTTAGTATGCACTCCATTAATTACTTTACTTTTGAAAAACTTCATGTTGATTATTGGAAAGATGTTCCTAACCGTTATCCAATGGGGTCGAATGTTGTTTTATCTAGTGAGGATGTAAGTATTGTTGTGGATGGTCTAAATAGGCAAATGGACTTTGTCTATGGGTCAAAATTTATTGAAATCCCTCCTGGTAAGTCTACTTTGGAGATTTATACATCAGATTGGTGTAAGAAAGCTCCAGAAGTAACGGTTGAATTTGAAGAAAGGTGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5fcdfea6e06dd792edd905c811b767a0ed4636e56405762d64f44b4f889e107c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8383
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank