Protein

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Genbank accession
XAO18264.1 [GenBank]
Protein name
putative tail or base plate protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDLKKWQDPLMNSELQQNYNDNLVKLAGSLEKANQDMTHVNQRISNLVIKSGGNESNEVVDARVSSLVPETEFTTLNDRINYAENALITGVGKLSTNVFDLMDKYNDIDTILKRLYGLDSSNIEIFVDDARGDDIAGTGEIDAPFKTINKAVMTLPRVLNSNSVNIWIVPGRYNEDVVIPPIMGGDIYIRSTNFETVDPTSSTGCQVRSISATGSNGYLYIAGLEETNTAGTTKNYFIKATRCGFVRITKCRMAFNTKAIDPFTAVFIDACSADVNGCYFASQNVDVRGYNTARVEVQNIVHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLSGGGVVRT
Physico‐chemical
properties
protein length:341 AA
molecular weight: 37292,42260 Da
isoelectric point:4,89278
aromaticity:0,07918
hydropathy:-0,23636

Domains

Domains [InterPro]
DC_1253
STR
1–335
DC_1253
Coil
Unmapped
30–50
Coil G3DSA:3.30.1910.20
IPR011050
STR
124–301
IPR011050
XAO18264.1
1 341
Architecture
STR
STR 1-335 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAO18264.1
1 341
Domain Start End Length (AA) Confidence
N-terminal 1 159 159 0,8938
Central domain 160 330 172 0,9364
C-terminal 331 341 10 0,7726
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-159
Central
160-330
C-terminal
331-341

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage vB_Lmo_W16
[NCBI] 		3129221 Viruses > unclassified bacterial viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAO18264.1 [NCBI]
Genbank nucleotide accession
PP453649 [NCBI]
CDS location
range 2379 -> 3404
strand -
CDS
ATGGATTTAAAAAAATGGCAAGACCCACTCATGAACTCAGAACTACAGCAAAACTATAACGATAATTTAGTAAAACTAGCTGGAAGCCTTGAAAAAGCTAATCAAGATATGACACATGTTAATCAGCGCATATCTAACTTAGTTATTAAATCCGGCGGGAATGAATCGAACGAAGTAGTAGACGCACGCGTTTCTTCTCTGGTTCCAGAAACTGAATTCACAACATTAAACGATAGAATAAATTACGCGGAAAATGCTTTAATAACAGGTGTCGGAAAGCTTTCAACGAATGTTTTTGATCTAATGGATAAATACAACGATATAGATACTATTTTAAAGCGTTTATATGGCTTAGATAGCAGCAATATTGAAATATTTGTGGATGATGCAAGAGGCGATGATATTGCAGGAACTGGTGAAATTGATGCACCTTTTAAAACGATAAATAAAGCAGTAATGACTTTGCCCCGTGTATTGAATAGTAACTCTGTGAATATCTGGATTGTTCCTGGTCGGTATAATGAAGATGTCGTTATTCCGCCAATCATGGGAGGGGACATCTACATTAGGTCTACAAACTTTGAAACAGTAGACCCTACCAGTAGCACCGGATGCCAAGTTCGAAGTATTTCTGCGACAGGAAGTAACGGCTATTTATATATTGCTGGTTTAGAAGAAACGAACACGGCAGGCACAACGAAAAACTACTTCATTAAAGCGACGCGATGCGGATTTGTAAGGATTACAAAATGCCGAATGGCCTTCAATACTAAGGCAATAGACCCGTTCACGGCGGTGTTTATTGATGCTTGTTCTGCTGATGTCAACGGCTGTTATTTTGCCTCACAAAATGTTGATGTTCGCGGTTATAACACTGCTAGAGTCGAGGTTCAGAATATCGTCCATGGCGCAAAAAGTGCGATTGGTTTGTATCCTCAAAGCGCCGATATTTTCAATCTCAATAGCGGGACTTGGGAAGCTGATACGCCTACGAAACTGAGTGGCGGGGGAGTGGTTAGAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b5ef27eca909663c7263dcce2148805bc5e1b0fc3e0032555473e10ee0ac00ca
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8533
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genomic Characterization of phages for biocontrol of Listeria monocytogenes in aquaculture in the United Kingdom Mutai,I.J., Kubala,A., Maina,M., Dowah,A., Wang,B., Gurusinghe,A. and Bhandare,S.G. 2021-12-15 — GenBank