Protein

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Genbank accession
YP_010761675.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MADIGQLPIENIWSTGGDMVAPTPAQQQGGWGIQSVPRQWWNWKWNLHDTNLAYLLQKGIPEWTSTQEYIANKSFCTRGGFVYRAARTHTGSDPAVPSANWSRAFADFTTASSALGSLTPREGGIPYFLSDVGAGVFDSTSYGRGMLNTANAVGARTYLGAQAESIVLTNLSSVTRAANTVPYFNTDTSMSTFNVTAYGRGLVNAANAANARTFLELANSAIITADPANRAHTLVYRDAAGNFNAGVITATLQGNAATATKLRSPVTINGVAFDGSQNIVLPGLDTSYAGTVARLHINGANMPGADKTTQIALRNTSDDNWISLAVINDRTLQFAFRDQTDPIVQIGAQVVLHTGNQFSLGPTLDDARTRLGVQRIQQDPAQTSLFNGDRSHYIWIQNVGASGVFSAANNTHLWRFDENGQLTNGTVPTARITGLANSASTPCSTSNLANQIVQRNQDGAIAVGAVLAYGQITAVGNHIYTRAAGSSNAHIGFQRPDASELALIWGAQSNNSLNFRTSGGVTGMSLIGSDLTVTGRVNAATLNASGNVNASGNVTATGAVVVGTAVLNTAGNITGPAYGGFGSLTNWVDSVYAKKTDVMTDAQIWAAVARAGATEIGTYVLAGDKTGGSGAVGTMRAGSQLQPYSTISYTAGSLPAAGQYRCMGAFAGGGNQITLWQRIS
Physico‐chemical
properties
protein length:680 AA
molecular weight: 71147,15600 Da
isoelectric point:8,32469
aromaticity:0,08088
hydropathy:-0,10118

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010761675.1
1 680
Domain Start End Length (AA) Confidence
N-terminal 1 251 251 0,6688
Central domain 252 450 200 0,2057
C-terminal 451 680 229 0,8987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-251
Central
252-450
C-terminal
451-680

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage EM
[NCBI] 		2936914 Uroviricota > Caudoviricetes > Vandenendeviridae > Baldwinvirus > Baldwinvirus EM
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010761675.1 [NCBI]
Genbank nucleotide accession
NC_073601.1 [NCBI]
CDS location
range 45128 -> 47170
strand +
CDS
ATGGCTGATATCGGTCAACTACCTATTGAGAATATTTGGTCCACAGGCGGGGATATGGTAGCCCCGACCCCAGCCCAGCAGCAAGGCGGATGGGGAATTCAGTCTGTTCCACGTCAGTGGTGGAACTGGAAGTGGAACCTTCATGATACCAACCTAGCGTACCTGCTACAGAAGGGTATCCCAGAGTGGACCAGCACTCAGGAATATATCGCAAACAAATCTTTCTGTACCAGAGGCGGATTTGTATATAGAGCTGCCCGTACACACACTGGAAGTGATCCGGCTGTACCTAGTGCCAACTGGAGCAGAGCGTTTGCAGACTTCACGACGGCAAGTAGTGCTCTCGGGAGTCTAACCCCGCGAGAAGGGGGTATTCCGTACTTCCTAAGCGACGTAGGTGCTGGAGTATTTGACTCCACGTCTTACGGACGAGGAATGCTTAACACAGCTAATGCTGTCGGTGCTCGCACATATCTGGGAGCGCAAGCTGAGTCTATTGTTCTGACCAACCTGTCTAGCGTTACAAGGGCTGCCAACACTGTCCCTTACTTCAACACTGACACATCTATGTCTACGTTCAATGTTACAGCATACGGACGAGGGCTTGTCAACGCAGCTAATGCTGCTAACGCCAGAACCTTCCTAGAACTGGCCAACTCTGCTATCATCACAGCAGACCCAGCGAACAGGGCTCACACCCTAGTGTACAGAGATGCTGCTGGAAACTTCAACGCGGGAGTTATCACAGCAACGCTACAAGGTAACGCTGCCACGGCAACGAAGCTGCGATCTCCTGTTACAATCAACGGGGTTGCTTTCGACGGAAGCCAGAACATTGTGCTCCCCGGGCTAGACACCAGCTACGCCGGAACAGTAGCTAGACTGCACATCAACGGCGCTAATATGCCCGGAGCAGACAAAACTACTCAAATCGCTCTAAGAAACACATCGGACGATAACTGGATTAGTCTGGCAGTAATTAACGACAGGACGTTGCAATTCGCGTTTAGGGATCAGACTGACCCAATCGTTCAGATTGGTGCGCAAGTAGTTCTGCACACTGGGAACCAGTTTAGTCTTGGTCCTACGCTGGATGATGCTAGGACTCGACTAGGTGTTCAACGTATTCAACAAGACCCCGCTCAGACTTCCCTATTCAACGGGGACCGTTCCCACTACATCTGGATTCAAAATGTAGGGGCGTCTGGAGTATTCAGCGCAGCCAATAACACGCACTTGTGGCGGTTTGATGAAAATGGCCAACTGACTAACGGTACAGTGCCAACTGCTCGTATCACAGGATTGGCTAACTCTGCCTCTACTCCGTGTTCTACTTCCAACTTGGCTAACCAGATTGTACAGAGAAACCAAGATGGAGCTATTGCGGTAGGAGCCGTCCTAGCTTATGGTCAAATCACAGCAGTAGGTAACCACATCTATACCCGGGCGGCAGGAAGTTCGAATGCTCACATCGGGTTCCAGAGACCAGATGCCAGCGAGCTAGCTCTGATTTGGGGTGCTCAGTCTAACAACTCCCTGAACTTCCGTACTTCGGGAGGAGTAACTGGAATGTCCCTAATTGGGTCTGACCTGACAGTTACCGGGAGAGTAAACGCTGCTACTTTGAATGCCTCTGGCAACGTAAACGCCAGCGGGAACGTCACCGCTACTGGTGCAGTAGTAGTAGGTACAGCCGTCCTCAACACAGCGGGGAACATTACTGGTCCAGCTTATGGCGGATTTGGCTCTCTGACAAACTGGGTTGACTCGGTGTACGCCAAGAAGACTGACGTTATGACTGACGCTCAGATTTGGGCTGCTGTTGCTAGAGCGGGAGCTACCGAGATCGGAACTTATGTCCTAGCTGGAGATAAGACAGGTGGTAGTGGCGCAGTAGGGACTATGCGAGCAGGAAGTCAGTTGCAGCCGTACTCGACTATTAGCTACACTGCTGGTTCGCTTCCAGCGGCTGGCCAGTACCGATGCATGGGCGCGTTTGCCGGCGGTGGTAACCAAATCACCTTGTGGCAACGAATTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1d89d3a5c43db285433f35e883603e65ba24bac2f7d6976cba814f83f5daf674
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6676
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage-Antibiotic Combinations Against Multidrug-Resistant Pseudomonas aeruginosa Holger,D., Lev,K.L., Kebriaei,R., Morrisette,T., Shah,R., Alexander,J., Lehman,S.M. and Rybak,M.J. 2022 — GenBank