Protein

View in Explore
Genbank accession
XHO50560.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MATVKKLGALAADIQSLMPDNNEGFIVPASARELYDNIMVSVIDAKGVLDMTNNTVEQVLSATATPVINWTATYKDDGMDFNTAQGSVTAYAQAGWWHEFNFVCTIAGVQNRIVTATLYINDQPTTVQSQVRLDGANSPVIIQLDALPTVTGAADTFSVKLSADQPTNVLIPRGFMQIVRKPTQ
Physico‐chemical
properties
protein length:184 AA
molecular weight: 19850,30180 Da
isoelectric point:4,54322
aromaticity:0,07065
hydropathy:0,04620

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaP_R28Z
[NCBI] 		3348375 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHO50560.1 [NCBI]
Genbank nucleotide accession
PQ289634.1 [NCBI]
CDS location
range 41808 -> 42362
strand +
CDS
ATGGCTACGGTCAAGAAATTAGGTGCGCTAGCGGCTGATATTCAGTCGTTAATGCCTGACAACAATGAGGGCTTCATCGTGCCAGCTTCGGCACGTGAGCTTTACGACAACATCATGGTCAGTGTTATTGACGCCAAGGGCGTACTGGACATGACTAACAACACAGTTGAGCAAGTGCTGAGTGCAACCGCTACACCTGTGATTAACTGGACAGCCACGTACAAAGACGATGGTATGGACTTCAACACTGCACAAGGCTCAGTCACTGCGTATGCACAGGCTGGCTGGTGGCATGAGTTCAACTTCGTGTGTACTATTGCAGGCGTCCAGAACCGCATCGTGACAGCTACTTTGTACATCAATGACCAACCTACTACTGTACAGAGTCAGGTACGTCTAGACGGTGCTAACAGTCCTGTAATCATCCAGCTTGATGCACTGCCTACAGTGACAGGCGCTGCTGATACGTTCAGCGTGAAGTTAAGTGCTGACCAACCGACTAACGTGCTAATCCCTCGTGGGTTCATGCAGATTGTTCGGAAACCAACTCAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b23f2538cea43bb754d385563e6482d0f0488345c03cb8d9a39d4e38ae074887
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6325
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50