Protein

View in Explore
Genbank accession
YP_009811207.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,59
Protein sequence
MGLVQVDPALIDPKGGTVNQVLAKVSENQVGFRDENKDDPSADLSSVSFDSQTGTLTIIFQDGTQKSVSGLPTADQMKAGKEGKQGKQGIQGNNGKDGKDGRDGEPGCPGIRGTRGRQGPTGNTGPIGPTGETGPVGPTGAIGPTGPAGRDAIINEYEVSPVLDPLTGKEIVGAFVGSDYDPNTGRTTNFGRAIAPASQSAINVAFNKPFLNRCASLTITFLNNATNQAKTYSIYNTDGTAVKENVLLGGFMLKSTGANTVGWDFYYSAIGD
Physico‐chemical
properties
protein length:272 AA
molecular weight: 28104,76290 Da
isoelectric point:5,01868
aromaticity:0,06250
hydropathy:-0,45331

Domains

Domains [InterPro]
DC_0479
ATT
3–79
DC_0479 IPR008160 DC_0380
PTHR24637
Unmapped
77–151
PTHR24637
YP_009811207.1
1 272
Architecture
ATT
STR
RBD
ATT 3-79 | STR 98-151 | RBD 152-272
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811207.1 [NCBI]
Genbank nucleotide accession
NC_048053.1 [NCBI]
CDS location
range 57423 -> 58241
strand -
CDS
ATGGGATTGGTACAAGTAGATCCCGCTCTAATTGATCCGAAGGGCGGAACAGTCAATCAAGTTCTTGCGAAAGTTTCAGAAAATCAGGTTGGCTTTCGTGATGAGAACAAAGATGATCCTAGCGCGGATTTGTCGAGCGTTTCCTTTGATAGTCAAACAGGAACGTTAACGATTATTTTTCAGGACGGCACGCAAAAATCTGTTTCTGGTTTACCTACTGCGGATCAAATGAAAGCAGGTAAAGAAGGGAAACAAGGTAAGCAAGGCATTCAGGGAAATAACGGCAAAGACGGCAAAGACGGGCGCGACGGTGAACCGGGTTGTCCGGGAATTCGTGGAACAAGAGGACGACAAGGGCCAACTGGAAATACTGGCCCGATTGGCCCGACTGGTGAAACTGGCCCGGTTGGCCCGACTGGTGCAATTGGCCCGACTGGCCCTGCTGGTCGTGATGCAATTATAAATGAATACGAAGTTTCTCCAGTTTTAGATCCGTTAACCGGAAAAGAAATTGTTGGTGCGTTTGTTGGAAGTGATTACGATCCTAACACTGGACGCACAACAAACTTCGGTCGTGCAATTGCGCCTGCTTCTCAGAGTGCGATTAACGTTGCATTCAACAAACCTTTCTTGAACCGTTGTGCATCGCTTACGATTACGTTCTTGAATAACGCAACGAATCAGGCAAAAACTTATTCCATCTACAACACTGATGGCACGGCAGTTAAAGAGAACGTTCTGCTTGGTGGCTTCATGCTCAAGTCCACTGGTGCGAATACTGTAGGTTGGGATTTCTACTATTCCGCAATAGGGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fa8ef1d1e6ef5bc59b6618c2db589ee47d26a3841b563b898b300757e25e8f00
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7499
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank