Protein

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Genbank accession
QIG60721.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSNILDSAKKYIEETEEINLAHLVSLELPGSSGVFIYLTDYFRDITYKGQVYKSGVIKRVGDVKQTKELTIYRVPVQVSGAIDEEIDRVLNSKSFLNRKLKIDRVFLDEDGEIIQIYADGSTVTYFEGVIVSSALDESNTNKGKGRSVITWNCASKLYALDAINGRLTDDASHRGLINVNGIMQPSSSAKKPEYQLDKGFFHANKSIKLLAEYQTKEKRYRLKKRRAGGFRGLMGQKHYDMEEYWANVVKEVDMDINLTAKYLPVVYGVQKVAGIPIFFDTDINNPEEIWAVYAFCEGEIDGFLDIFFGDNPMICISEADQSKRACIGMKRNNGDTIGALAPASGRTVPSKHGEHYIYDDGNGPIDFWTFHGSLTQDAAKVLVDKAAAGSFKLQNDGNYGAEYWDDSFKLTDTAYLVVKFELNENRTSIPEVSAEIQGKKIPVYHEDGTVTADKTSLNLAWQTLDYLRSTTYGAGLTLAEIDLASVRECAKYMDAVDTSYDPDWVPYWRYLGWEDYTAENRQILQGSAILSTSDTVFKNVQSLIAQYDASLNIVSGKYTLTMEADKPVVYDINEGDIIDGSIKVSDNSMENKYNSIQASIIDPASAWGSNTITFFNKDYKIEDNGKDRKANVTFPFITNYYTARTRAEYYLRKSRYNRTVSFSLPFTFLWLYPNANISLSVKRYGWDKKHFLIQDMTWKANGHIMVTAREYAPDVFINSAQTDNSDDQIPDVVVSVLPPRDLQYDPKLGEPEVGLNGTLSWLPSLTKRVAYYTIKYTGLVDLITVPVSGTAPLSSRVTMPLYNLAEGEYTFEVRAVSPDGDTSLPAKLVVNVNPSAILPKIENLRLINRTDTSAKVFIGKDVELMWDELLEGASVSGFRYRLRFLDGDTGEVLRDTTTTSSSFIYTYDMNKEDYKRTHGTLGICRNIIIYIRGEADNNITSIDWTIL
Physico‐chemical
properties
protein length:947 AA
molecular weight: 106588,84860 Da
isoelectric point:5,14469
aromaticity:0,10982
hydropathy:-0,33464

Domains

Domains [InterPro]
DC_0187
STR
241–941
DC_0187
IPR032876
ATT
539–680
IPR032876
QIG60721.1
1 947
Architecture
STR
ATT
STR
STR 241-538 | ATT 539-680 | STR 681-941 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG60721.1
1 947
Domain Start End Length (AA) Confidence
N-terminal 1 306 306 0,8274
Central domain 307 522 217 0,5786
C-terminal 523 947 424 0,0465
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-306
Central
307-522
C-terminal
523-947

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPT02
[NCBI] 		2698726 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG60721.1 [NCBI]
Genbank nucleotide accession
MN954399.1 [NCBI]
CDS location
range 96391 -> 99234
strand -
CDS
ATGAGTAATATATTAGACTCAGCCAAGAAGTATATAGAAGAAACAGAAGAAATAAATTTAGCACATCTAGTCTCCCTAGAGCTACCTGGCAGTTCAGGTGTTTTTATATACTTAACAGATTATTTTAGAGATATTACTTATAAAGGTCAAGTATATAAATCGGGAGTAATCAAAAGAGTAGGCGATGTAAAACAGACCAAAGAGCTAACAATCTATAGAGTCCCAGTACAAGTAAGTGGGGCTATAGATGAAGAGATAGACAGAGTGCTAAATTCTAAGAGCTTTTTGAATAGAAAACTAAAAATAGATAGAGTATTCTTAGATGAAGATGGTGAGATTATTCAAATATATGCGGATGGCAGTACTGTTACCTACTTTGAAGGGGTTATAGTAAGTAGTGCATTAGACGAGTCAAATACTAATAAAGGTAAAGGGCGTTCTGTAATTACATGGAACTGTGCTAGTAAGTTATATGCACTTGACGCTATTAACGGCAGACTTACGGACGATGCGTCTCACCGAGGATTGATCAATGTAAACGGAATCATGCAACCCTCAAGCAGCGCTAAAAAGCCAGAATATCAATTAGATAAAGGCTTCTTCCACGCCAATAAGTCCATCAAGCTGCTAGCTGAATACCAGACAAAAGAAAAACGTTATCGTCTAAAGAAAAGACGTGCTGGAGGCTTCCGTGGTCTTATGGGACAAAAACATTATGACATGGAAGAATACTGGGCAAATGTAGTAAAAGAAGTAGATATGGATATAAACCTTACTGCCAAATATTTACCTGTAGTATACGGGGTACAGAAGGTTGCCGGTATACCTATTTTCTTTGATACGGATATTAATAACCCGGAAGAGATATGGGCTGTATATGCATTCTGTGAGGGCGAGATAGATGGGTTCCTAGATATATTTTTTGGAGATAATCCAATGATCTGTATATCTGAGGCTGACCAATCAAAACGCGCCTGCATAGGTATGAAGCGTAATAACGGTGACACCATAGGAGCTCTGGCCCCTGCTAGTGGAAGAACCGTACCTAGTAAGCATGGGGAGCACTATATCTATGATGATGGTAACGGGCCTATAGACTTCTGGACGTTCCACGGGTCACTAACCCAGGATGCTGCAAAGGTACTTGTGGACAAAGCGGCAGCAGGGTCGTTCAAGTTACAAAACGATGGTAACTATGGGGCAGAGTACTGGGATGACTCATTTAAGCTAACGGACACTGCTTACCTAGTTGTTAAGTTCGAACTTAATGAAAATAGAACCTCAATACCTGAAGTGTCCGCAGAAATCCAAGGTAAGAAGATACCAGTATACCATGAAGATGGGACAGTAACCGCGGATAAGACCTCCTTGAATCTAGCGTGGCAAACACTAGACTATTTACGTAGTACAACTTACGGGGCAGGACTTACTTTAGCTGAGATTGACTTGGCTTCTGTAAGAGAATGTGCTAAGTATATGGATGCAGTAGATACTTCATACGACCCTGACTGGGTTCCTTATTGGCGATACCTAGGTTGGGAGGATTATACAGCAGAAAATAGACAAATACTGCAAGGATCCGCTATCCTATCTACTAGTGATACTGTGTTTAAGAATGTGCAATCTTTGATTGCTCAATACGATGCTTCCTTGAATATAGTTAGTGGTAAGTATACTCTAACTATGGAGGCAGATAAGCCAGTAGTATATGATATAAATGAAGGAGATATAATTGATGGTAGTATCAAAGTCTCTGACAACTCTATGGAGAACAAGTATAACTCCATCCAAGCAAGTATAATTGATCCTGCTAGTGCATGGGGTAGTAATACTATTACCTTCTTCAATAAAGATTATAAGATAGAAGATAATGGGAAGGATAGAAAAGCAAACGTAACCTTCCCTTTCATAACTAACTACTATACTGCCCGTACAAGAGCCGAATATTATTTAAGAAAATCTAGATATAATAGAACTGTTTCATTTAGTCTACCTTTTACTTTCTTATGGCTATACCCAAATGCTAATATATCTCTAAGTGTAAAGAGATATGGGTGGGACAAGAAGCATTTCTTAATCCAAGATATGACTTGGAAAGCGAATGGGCACATTATGGTAACTGCTAGAGAATACGCTCCAGATGTGTTTATAAACTCTGCACAAACAGATAATAGTGATGATCAGATACCTGATGTAGTCGTAAGTGTATTACCCCCACGAGACCTACAGTATGACCCTAAGTTAGGTGAGCCCGAGGTAGGGTTAAACGGTACTCTTTCATGGTTGCCAAGCTTAACTAAAAGGGTGGCATACTATACTATTAAATATACAGGGCTAGTGGATTTAATTACTGTACCTGTATCGGGCACGGCTCCTCTGAGCTCAAGAGTTACTATGCCACTTTATAATTTAGCAGAAGGGGAGTATACCTTCGAGGTTAGAGCAGTATCCCCAGACGGTGACACTAGCTTACCAGCTAAATTGGTAGTTAATGTTAACCCTAGCGCTATACTACCTAAAATCGAAAATCTTAGACTTATAAATAGAACAGATACATCTGCAAAAGTATTTATAGGTAAAGATGTAGAGCTTATGTGGGACGAGCTACTGGAAGGTGCCTCGGTTTCAGGCTTTAGATACAGACTTAGATTTTTAGATGGTGATACTGGTGAGGTCTTACGAGACACCACTACTACCTCTTCTTCTTTCATCTATACTTATGATATGAATAAGGAAGATTATAAACGAACACACGGAACTCTCGGTATATGTAGAAATATTATAATATATATTCGAGGAGAAGCTGATAACAATATAACTTCAATTGATTGGACGATACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
89227ee590a9783ae48b24abcc24bc189287214212afb6c45fe44eab000192d2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2945
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VpT02 Kim,B.S. and Kim,M. 2012-06-15 — GenBank