Protein

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Genbank accession
DBA08564.1 [GenBank]
Protein name
phage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSDYRDDSNDTAVISDTTWLGLSAVSEGTARISETVLYGLLVLHTDTAAVSDEAIDRPAHLLVDQATISDAASDRLRARVLVVDTATAADRVTGTLRVLHVDDALVSDGVLDRVRGLTVDGATVADEAFGTRHAYTLVLDAARISDSTGQAASVLVEDAATVSDQATGALHGRVLLVDGASLADEVVDAHQAVQALLVDGASIAALVLDHLAARDLVSDAVVIEDITVGGDQDGGQAWTANVDSWAMSRYAPYTFRSLAVIDGRLYGIAEDGVYALDGDSQPVAGRIATGKLDIGQGALVHPHSAYLEYALDADGTVAMDVTTTQSGSAATYSYPLESEPADELTNGRFKFGRGLRGRHFTFTLRLTGRHGYINDLSVESAPTNRRV
Physico‐chemical
properties
protein length:387 AA
molecular weight: 40723,52810 Da
isoelectric point:4,47859
aromaticity:0,05426
hydropathy:0,02481

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
DBA08564.1
1 387
Domain Start End Length (AA) Confidence
N-terminal 1 334 334 0,9264
Central domain 335 376 43 0,0026
C-terminal 377 387 10 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-334
Central
335-376
C-terminal
377-387

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP-D14I
[NCBI] 		2969639 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA08564.1 [NCBI]
Genbank nucleotide accession
BK061585 [NCBI]
CDS location
range 19170 -> 20333
strand -
CDS
ATGAGTGACTACCGCGACGACTCCAACGACACGGCGGTAATCAGCGACACGACCTGGCTGGGGTTGTCGGCCGTCAGCGAAGGCACCGCGCGCATCAGCGAGACGGTGCTGTACGGGCTGCTGGTGCTGCACACCGATACGGCGGCGGTGTCGGATGAGGCTATCGACCGACCGGCGCACCTGCTGGTGGATCAGGCAACCATCAGCGATGCGGCGAGCGACCGGCTCCGCGCCAGGGTGCTGGTGGTCGATACGGCCACGGCGGCGGATCGCGTCACCGGCACCCTTCGTGTCCTGCACGTCGATGACGCCCTGGTGTCGGATGGGGTGCTGGATCGCGTGCGCGGCCTGACGGTGGACGGTGCCACGGTGGCCGACGAAGCATTCGGCACCCGTCATGCGTACACCCTGGTGCTGGATGCCGCGCGCATCAGCGACAGCACTGGCCAGGCCGCCAGTGTCCTGGTCGAGGACGCCGCCACCGTCAGCGATCAGGCGACTGGGGCGCTGCACGGTCGCGTACTGCTGGTGGATGGGGCGTCCCTCGCCGACGAGGTGGTGGACGCGCATCAGGCCGTGCAGGCGCTGCTGGTGGACGGGGCATCCATTGCCGCGCTGGTGCTGGACCATCTGGCGGCGCGCGACCTGGTATCGGATGCCGTGGTGATCGAGGACATCACCGTGGGGGGCGACCAGGACGGCGGCCAGGCTTGGACCGCAAACGTCGATAGTTGGGCGATGAGCCGCTACGCGCCGTATACCTTCCGGTCGCTTGCTGTGATCGACGGTCGGCTGTACGGCATCGCCGAAGACGGCGTTTATGCGCTGGACGGTGACAGCCAGCCGGTGGCCGGCAGAATCGCGACCGGGAAACTGGACATCGGCCAGGGCGCGCTGGTGCATCCGCATAGCGCCTATCTGGAGTATGCACTGGATGCTGATGGCACGGTGGCCATGGACGTGACCACCACGCAAAGCGGCAGCGCAGCGACCTACAGCTACCCGCTGGAGAGCGAGCCTGCAGACGAGTTGACCAATGGGCGCTTCAAGTTCGGCCGGGGCCTGCGCGGCAGGCACTTCACGTTCACGCTTCGCCTGACCGGCCGGCACGGCTATATCAATGACCTGAGCGTCGAATCGGCGCCGACCAACAGGAGAGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e56dd1a76110bdb6d27c5c9d1d8724a898c068951d043a996d98637f797a5acc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5178
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M. 2023 — GenBank