Protein

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Genbank accession
URQ05439.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,74
Protein sequence
MADLKVGSTTGGSVIWHQGNFPLNPAGDDVLYKSFKIYSEYNKPQAADNDFVSKANGGTKSRGFQKEVEFKEGVKISATFSGGSDLNGLYSGNGDGASREKANMDLHSWYGIGIWNTCTGDGVQGRTIWFNARRGTIETVGDIVSGRQVISNASVPTGPAHLTRKDYVDGAINTVTTNANSRVLRSGDTMTGNLTAPNFFSQNPASQPSHVPRFDQIVIKDSVQDFGYY
Physico‐chemical
properties
protein length:229 AA
molecular weight: 24687,92230 Da
isoelectric point:6,90437
aromaticity:0,10044
hydropathy:-0,50349

Domains

Domains [InterPro]
DC_0466
STR
1–227
DC_0466
IPR005601
STR
87–203
IPR005601
URQ05439.1
1 229
Architecture
STR
STR 1-227 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URQ05439.1
1 229
Domain Start End Length (AA) Confidence
N-terminal 1 33 33 0,9588
Central domain 34 218 186 0,0770
C-terminal 219 229 10 0,9460
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-33
Central
34-218
C-terminal
219-229

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_SCS4
[NCBI] 		2945961 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia sp.
[NCBI] 		1884818 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ05439.1 [NCBI]
Genbank nucleotide accession
ON506924 [NCBI]
CDS location
range 152828 -> 153517
strand +
CDS
ATGGCTGATTTAAAAGTAGGTTCAACAACTGGAGGCTCTGTCATTTGGCATCAAGGAAATTTTCCATTGAATCCAGCCGGTGACGATGTACTCTATAAATCATTTAAAATATATTCAGAATATAATAAACCACAGGCAGCTGATAATGATTTCGTTTCTAAAGCTAATGGTGGCACAAAGTCTAGAGGTTTCCAAAAAGAAGTAGAATTTAAAGAAGGCGTTAAGATTTCTGCGACGTTTTCTGGTGGTTCAGACCTGAATGGGTTATATTCTGGCAATGGAGATGGAGCTTCCAGAGAAAAAGCTAACATGGATTTACATTCATGGTACGGCATTGGTATTTGGAATACATGCACAGGTGATGGGGTCCAGGGACGCACAATCTGGTTTAATGCCAGGCGTGGTACAATTGAAACAGTTGGCGATATTGTTTCAGGCCGACAAGTTATTTCTAATGCTTCAGTACCGACCGGCCCAGCACACTTAACTCGCAAAGATTATGTCGATGGAGCAATAAATACTGTTACGACAAATGCAAACTCTAGAGTGTTACGATCTGGTGACACTATGACAGGTAATTTAACAGCACCAAACTTTTTCTCGCAGAATCCTGCATCTCAACCCTCACATGTTCCACGATTTGACCAAATCGTGATTAAGGATTCTGTTCAAGATTTCGGCTATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e67561222d94d9c5fed26fd8a9ae3d0428a43ff3c4491c442d3a57b911d86a03
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6639
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia phage vB_EcoM_SCS4 Alexyuk,M., Bogoyavlenskiy,A., Alexyuk,P., Manakbayeva,A. and Berezin,V. 2022-11-17 — GenBank