Protein

View in Explore
Genbank accession
XYM60807.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTSLPIPSEDPRDLKFNAGKFDEVMTSDAHYYVDRFGVKRWTIAGFQYTAEEAIRAYGYITMDSFEDGATLTLPNQVLRYEATGEYYRWDGAFPKAVAAGSTPASTGGVGLGAWISVGDAAFRQEANKKFKYSVKLSDYSTLQEAATAAVDGVLIDRDYTFTDNETVDFGGKVLTIDCKAKFIGDGNLTFTNLGAGSLVNSPYMESATTPWMIFPWNGDGSWITEAAAVAATLAQTRDRGYQPTVSDYTKFPGIEALLPSYAKDQHIHSTLRIFNCTGITVKNAKGSVGCYLFDTCFYCKAVDSDLAVAGGAAGITFMNLSGNKGVGNYCIGGRIAYGSVSSVQFLRQDGGVDHDGGVIGFTSFRPGESGVKTWQGTVGSTSARCYNLQFRKSLSMYPVWDGFDLGADIGNETDRPGDYTLAEYPVHQLPTNHIIDDLVAIGSLGVGIGMDGKGGYVSNVLMQDCAGSGALWFTYGKTFTNVSVIDTNTLDFNANQVYIQGDCIVNGLRLVGIKPTPSNGLIVDAPNTTISGITGNVDSRKVNAANIVDPMLGNSRINSYQDTGILDIRLHKLSTTMDAVSIKAHSNGAGSGSAWASLGAASGSVSDAVSIKVNYTDNRAAEIPFSPTVVSDSAVKDNSCFVPYWEGSSLKALVKKADGSLVRVTLATV
Physico‐chemical
properties
protein length:673 AA
molecular weight: 71677,40670 Da
isoelectric point:5,06892
aromaticity:0,10104
hydropathy:-0,09406

Domains

Domains [InterPro]
DC_1559
ATT
1–175
DC_1559
G3DSA:2.10.10.80
ATT
62–126
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
64–123
IPR040775 IPR012332
IPR012332
STR
127–673
IPR012332
IPR015331
RBD
129–671
IPR015331
XYM60807.1
1 673
Architecture
ATT
STR
ATT 1-175 | STR 176-673
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM60807.1
1 673
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9838
Central domain 146 569 425 0,9852
C-terminal 570 673 103 0,8717
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-569
C-terminal
570-673

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_StyS_KFSST1
[NCBI] 		3424872 Viruses >
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM60807.1 [NCBI]
Genbank nucleotide accession
PV659140.1 [NCBI]
CDS location
range 40182 -> 42203
strand -
CDS
ATGGCTACCACACCGACTAGCTTACCAATCCCGTCAGAAGACCCGCGCGACCTGAAGTTTAACGCTGGTAAATTTGATGAAGTCATGACATCTGATGCACATTACTATGTGGACAGATTTGGCGTAAAACGCTGGACTATTGCTGGATTCCAGTACACTGCGGAAGAGGCCATTCGTGCTTATGGATATATCACAATGGATAGCTTTGAAGATGGCGCGACGTTGACGCTACCAAATCAGGTGCTACGTTACGAGGCAACCGGAGAATATTACCGATGGGATGGTGCATTTCCTAAGGCTGTAGCTGCTGGTTCAACTCCTGCATCAACTGGTGGCGTTGGTTTAGGCGCGTGGATTAGTGTTGGTGACGCAGCATTTAGACAGGAAGCCAACAAAAAATTCAAATATTCAGTAAAATTATCAGATTATTCTACCTTGCAGGAAGCAGCAACAGCAGCAGTTGACGGAGTGTTGATTGACCGCGACTATACATTCACCGACAACGAGACAGTTGATTTTGGCGGCAAAGTACTAACCATCGACTGTAAAGCTAAATTTATCGGAGATGGTAATCTTACATTTACTAATCTTGGCGCGGGTTCTTTAGTAAACTCTCCGTATATGGAAAGTGCCACAACTCCGTGGATGATTTTTCCATGGAATGGAGATGGAAGTTGGATTACGGAGGCCGCGGCAGTTGCGGCAACGCTGGCACAAACCAGGGATAGGGGTTATCAACCAACCGTAAGCGACTACACCAAATTTCCTGGAATTGAGGCATTGCTGCCTAGTTATGCGAAAGACCAACATATCCATTCCACACTTCGTATTTTTAACTGTACTGGTATTACTGTAAAAAATGCTAAAGGGTCGGTCGGTTGCTACCTGTTTGATACTTGCTTTTATTGTAAAGCTGTTGATTCTGATTTGGCGGTAGCAGGTGGGGCTGCGGGAATTACCTTTATGAATCTATCCGGTAATAAGGGGGTTGGTAACTACTGTATAGGTGGGAGAATTGCTTACGGTTCTGTTAGCTCAGTTCAATTCCTGCGCCAAGATGGCGGGGTTGACCATGATGGCGGTGTTATAGGTTTTACGTCATTCCGTCCTGGGGAGTCAGGTGTTAAGACATGGCAGGGAACGGTCGGAAGTACATCTGCCCGTTGTTACAATCTTCAGTTTAGAAAATCATTATCAATGTACCCTGTGTGGGATGGGTTTGATTTAGGCGCTGATATCGGCAATGAAACTGACAGGCCAGGTGATTATACGTTGGCTGAGTATCCAGTACATCAATTACCGACCAACCACATAATTGATGACCTTGTAGCTATTGGCTCACTAGGTGTTGGCATAGGAATGGATGGTAAAGGCGGCTATGTATCAAACGTCTTGATGCAAGATTGCGCAGGCTCTGGAGCACTATGGTTTACATATGGAAAGACATTCACCAATGTTTCAGTAATAGATACAAATACGCTGGATTTCAATGCAAATCAGGTATACATACAAGGAGATTGTATTGTTAATGGTTTGCGTTTAGTTGGTATAAAGCCAACCCCATCTAACGGACTGATAGTAGACGCGCCAAACACTACAATATCAGGTATTACTGGTAATGTTGACAGTAGAAAGGTTAATGCTGCTAACATTGTTGACCCAATGCTGGGGAATTCCAGGATTAACAGTTACCAAGATACTGGCATATTAGATATCAGGCTGCATAAGCTGAGCACTACAATGGATGCCGTTAGTATTAAGGCACATTCAAATGGCGCTGGAAGTGGGTCGGCATGGGCGTCTTTGGGGGCTGCGTCTGGAAGTGTTAGTGATGCCGTATCAATAAAGGTTAACTACACAGACAACAGGGCAGCAGAAATACCTTTCAGCCCAACCGTCGTTAGCGATAGCGCAGTAAAAGATAACTCTTGCTTCGTTCCATACTGGGAAGGAAGCTCACTAAAAGCACTTGTCAAGAAAGCTGATGGTTCTTTAGTTAGGGTTACATTAGCAACTGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
179c3eb6afd83b10feec34aad121857b6b63e5062612c57befbee819a4ebdc47
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8648
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Functional and Genomic Features of a Lytic Salmonella Phage vB_StyS_KFSST1 for Development as New Feed Additive Kim,S.-H., Choi,I.Y., Cho,G.-S., Franz,C.M.A.P. and Park,M.-K. 2025-07 — GenBank