Protein

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Genbank accession
WPK20393.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNGGYNDASWIPDDMYVPNGQLDVSKIPLLTVNGRGLVNGGNCGVMLYAFRSDGSSSPNNFQWSASHPFGYPLSSTALSNQVAPVGFSIVPCPTRPGRKRFRFPGKKLAGRPLPFQGSTQWWGAVNSFSLRYNNPLSGVGEDDTASISFVVRFARRFSHQSGAQLAWYFSVGYPSVRVNPPGSAWTNYGITYMVPGFLASYVIFGSSQVLNLSSSTPQPNECYTPKDGLPWVYLDPGASASKLTVPNYTSPGLDGDFFKFEVDRDYHIEIKLMKNGDNRTTRPMSMVIIDGVTVKNYGGVTNTDFSVPNTGDLADSDRRDRDYLGAFQFNFQMNHWSGGSNSTSWFYPNMTEECGPMMISDIVFGTYPQSDHANYAFGPTTRVWGESPNTDIKTSFKRPEGASSNASVVGRPMKVNTPETSSELSGTIGDSDEYKTDGSSMPDFAGTVLAVQLKTVARAESSDGTIVSTFDGKEVGEVPLASSTGANYSTVVHTVEMPNPISPSEVAEKPFGFKVKEE
Physico‐chemical
properties
protein length:518 AA
molecular weight: 56301,96940 Da
isoelectric point:5,41132
aromaticity:0,11583
hydropathy:-0,38745

Domains

Domains [InterPro]
DC_0639
STR
1–518
DC_0639
WPK20393.1
1 518
Architecture
STR
STR 1-518
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK20393.1
1 518
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0225
Central domain 11 200 191 0,1694
C-terminal 201 518 317 0,4386
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-200
C-terminal
201-518

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SD-13_S19
[NCBI] 		3096169 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK20393.1 [NCBI]
Genbank nucleotide accession
OR699186 [NCBI]
CDS location
range 19585 -> 21141
strand -
CDS
ATGAACGGGGGGTATAACGATGCTTCATGGATTCCGGACGATATGTATGTGCCTAATGGCCAATTGGACGTTTCTAAGATCCCGTTACTGACGGTTAACGGTAGAGGTCTTGTTAACGGAGGGAATTGTGGGGTGATGCTTTACGCATTCCGTTCTGATGGGTCTTCCTCTCCTAATAATTTCCAATGGAGTGCATCACACCCGTTTGGGTATCCGCTATCGTCTACGGCGTTATCCAATCAAGTTGCGCCGGTGGGTTTTTCGATTGTTCCTTGCCCCACAAGGCCTGGTCGGAAACGTTTTAGATTCCCCGGTAAGAAATTAGCTGGCCGACCTTTACCGTTCCAAGGGTCTACACAGTGGTGGGGGGCCGTTAATAGTTTTTCTTTGAGGTACAATAATCCGTTGTCTGGGGTAGGAGAAGACGACACGGCGAGTATTTCGTTCGTAGTTCGTTTTGCCCGTAGGTTCTCACACCAAAGTGGCGCTCAACTGGCGTGGTATTTTTCTGTCGGGTATCCGAGTGTTCGGGTAAACCCGCCGGGGAGCGCTTGGACTAACTACGGGATAACATATATGGTTCCCGGGTTCTTGGCTAGCTACGTTATTTTCGGAAGCTCGCAAGTGTTGAACCTTAGTAGTAGCACCCCGCAACCAAACGAATGTTATACTCCTAAAGACGGCCTACCTTGGGTTTACCTTGACCCGGGGGCTTCGGCCTCAAAATTAACGGTACCTAACTATACTTCTCCCGGGCTTGATGGTGACTTTTTTAAGTTTGAGGTGGACAGGGACTACCACATAGAAATAAAACTCATGAAGAACGGAGATAACCGCACAACGCGTCCTATGAGTATGGTGATTATTGACGGTGTCACGGTTAAGAACTACGGTGGGGTTACTAATACGGATTTCTCCGTGCCTAACACCGGGGATTTAGCCGACTCCGACCGGCGTGATCGAGATTATCTCGGTGCTTTCCAGTTTAATTTCCAGATGAACCACTGGTCAGGTGGGTCGAATTCTACCTCTTGGTTCTATCCAAATATGACAGAAGAATGTGGCCCGATGATGATAAGTGATATTGTGTTCGGTACATACCCTCAATCCGACCATGCTAATTATGCTTTCGGCCCTACTACTCGCGTGTGGGGAGAGAGTCCGAATACAGACATAAAAACCTCGTTTAAGAGACCCGAGGGTGCCTCATCGAACGCTAGTGTAGTTGGAAGACCGATGAAAGTGAATACTCCTGAAACTTCGTCAGAACTATCAGGGACTATCGGGGACTCCGACGAATACAAAACGGACGGAAGTTCTATGCCTGATTTCGCCGGTACGGTTCTAGCAGTTCAACTAAAAACTGTCGCGAGAGCGGAATCCTCCGACGGCACTATCGTATCTACTTTCGACGGCAAAGAGGTCGGTGAAGTACCTTTAGCGTCTTCTACCGGGGCTAACTACTCTACGGTTGTCCACACGGTAGAGATGCCTAACCCGATATCTCCTAGTGAAGTTGCGGAAAAACCATTCGGATTTAAGGTGAAAGAGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eae9bbd441b14447c368127baed68e6617011062f41da167a6792139990ca090
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4468
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence a group of lytic Salmonella phages Dlamini,S.B., Montso,P.K., Ateba,C.N., Mnisi,M.C. and Mlambo,V. 2023-09 — GenBank