Protein

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Genbank accession
YP_009795364.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MPLVSSSIANMVNGVSQQPFTLRLASQAELQENGLSTVAQGLKKRPPTKHIKRLGSAITGSAYIHTINRDSVERYEVVITNGDLKVYDTAGDQKTVNFPNGKAYLNSTDPATSFRAVTVADYTFIVNKKTVTAASATNSPTRPFESLANVKVGLYSKTYTITVSGVGTATYSTPDGTVASHAAQITTDYIANQLASGLITLGGFTSVNQVGSVIYITRPTDYTISATDGYNNAALNVIKGTVQRFSDLPANANFQDFTVEIAGDNTSESDNYWVKFDKTGNNSGVWRETIKPGISVGLSPSTMPWVLVRESDGTFTFKTIPWTNRLVGDEDSAPHPSFVGRTIQDVFFYRNRLGFIADEAVVMSEAGQFFNFYPTTVTQLLDSDRIDVSASHTKVSNLNFAVAFNKDLLLFSSQTQFSVESGDLLTPKSVSIKPTTEFECSTLAPPVGIGRNVYFAVPKGEFEGFREFYVADNAGTNDAAEITGHVPKYIPKGAYKIAVALNEDFFVVLTSGEPNAMYAYKFYWNNNEKLQSSWSKWTFPSTDTILHAEFIQSELFILINRPDGLYLEKLSVALGDIGTNEPYNVHLDRKLTVPKASLTYDGTYTIISSAALPWNPTDGTYTAVVATSQPQKAGVLYPVIWDGTNAKILGNHVDSDLIVGRRYAFRYRFSPLLVRQQSGQGQKADTVARLQIRNMQVNFSESGNFQAKVTPYGRDTYTYTYSGKTLGLPSANIGAIGIEDGKFRFPVMSQNTTVDIELFSDSPLPCVFLSADWEGYYVRRSQAV
Physico‐chemical
properties
protein length:784 AA
molecular weight: 85960,32510 Da
isoelectric point:5,95271
aromaticity:0,11224
hydropathy:-0,20357

Domains

Domains [InterPro]
IPR058003
TTP
1–783
IPR058003
YP_009795364.1
1 784
Architecture
TTP
TTP 1-783 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009795364.1
1 784
Domain Start End Length (AA) Confidence
N-terminal 1 130 130 0,9428
Central domain 131 329 200 0,3409
C-terminal 330 784 454 0,2849
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-130
Central
131-329
C-terminal
330-784

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage DU_RP_I
[NCBI] 		2041493 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009795364.1 [NCBI]
Genbank nucleotide accession
NC_047888 [NCBI]
CDS location
range 23176 -> 25530
strand +
CDS
ATGCCCCTCGTTTCTTCTTCCATCGCCAACATGGTGAACGGGGTCTCTCAGCAACCCTTCACGCTGCGTCTCGCGTCTCAAGCTGAGTTGCAGGAGAACGGCCTCAGTACCGTGGCTCAGGGGTTGAAGAAGAGGCCCCCAACCAAGCACATCAAACGCCTCGGCAGTGCCATCACCGGCTCTGCCTACATCCATACCATCAACCGTGACTCTGTGGAGCGGTATGAGGTGGTCATCACGAACGGTGACCTGAAGGTCTACGACACGGCAGGGGACCAGAAGACGGTGAACTTCCCGAATGGGAAGGCGTACCTGAACTCCACGGACCCTGCTACGTCCTTCAGGGCCGTCACTGTGGCGGACTACACGTTTATCGTGAACAAGAAGACTGTCACCGCGGCCAGTGCCACGAACTCCCCAACGCGGCCCTTCGAGTCCCTCGCAAACGTGAAGGTTGGGCTCTACTCGAAGACCTACACCATCACCGTCTCCGGTGTGGGCACGGCCACCTATAGTACCCCCGATGGCACCGTTGCGTCCCACGCGGCACAGATCACCACGGACTACATCGCCAACCAGCTTGCGAGTGGTCTCATTACCCTTGGTGGATTCACCTCAGTGAACCAGGTGGGCTCCGTCATCTACATCACCCGGCCCACCGATTACACCATCTCCGCAACAGATGGGTATAACAACGCGGCCCTGAACGTGATTAAGGGGACGGTGCAGAGGTTCTCGGACCTTCCCGCGAATGCGAACTTCCAGGACTTCACTGTGGAGATCGCAGGGGACAACACCTCGGAGTCCGATAACTATTGGGTCAAGTTTGACAAGACCGGGAACAACTCCGGTGTCTGGCGCGAGACCATCAAGCCAGGCATCTCGGTTGGTCTTAGTCCCAGCACGATGCCGTGGGTACTGGTCCGTGAGTCGGACGGCACGTTCACCTTCAAAACCATCCCCTGGACGAACCGGCTGGTGGGTGATGAAGACTCCGCCCCACACCCATCGTTTGTGGGCCGCACCATCCAGGATGTGTTCTTCTACCGGAACCGCCTGGGCTTCATCGCGGATGAGGCTGTGGTGATGTCGGAGGCTGGCCAGTTCTTCAACTTCTACCCGACCACGGTGACGCAACTCCTGGATTCCGACCGCATCGACGTATCAGCATCCCACACGAAAGTCTCGAACCTGAACTTCGCGGTGGCCTTCAACAAGGACCTCCTGCTGTTCTCCTCGCAGACTCAGTTCTCGGTGGAATCAGGTGACCTCCTGACACCCAAGAGCGTCTCCATCAAGCCCACCACGGAGTTCGAGTGCAGCACCCTTGCGCCTCCCGTTGGGATTGGACGCAACGTCTACTTCGCGGTCCCTAAGGGTGAGTTCGAGGGCTTCCGTGAGTTCTACGTAGCGGACAACGCAGGCACCAATGATGCGGCTGAGATCACCGGCCACGTCCCGAAGTACATCCCGAAGGGGGCCTACAAGATCGCTGTGGCTCTCAACGAGGACTTCTTCGTGGTGCTGACTTCAGGGGAACCCAACGCGATGTATGCGTACAAGTTCTACTGGAACAATAACGAGAAGCTCCAAAGCTCCTGGTCCAAGTGGACCTTCCCGAGCACGGACACGATTCTCCACGCGGAGTTCATCCAGTCGGAACTGTTCATCCTCATCAACCGGCCCGATGGTCTCTACCTGGAGAAGCTCAGTGTGGCTCTCGGGGACATCGGGACGAACGAGCCCTACAACGTCCACCTGGACCGCAAGCTGACGGTGCCGAAAGCAAGCCTCACGTATGACGGCACGTACACCATCATCTCCTCCGCGGCTCTCCCGTGGAACCCAACGGATGGAACGTACACGGCAGTGGTGGCCACCAGTCAGCCGCAGAAGGCTGGCGTCCTCTACCCGGTCATTTGGGATGGGACGAACGCCAAGATTCTCGGTAACCATGTGGACTCCGACCTCATCGTTGGTAGGCGCTACGCCTTCCGCTATCGCTTCTCGCCGCTACTGGTCCGCCAGCAGTCCGGCCAGGGCCAGAAGGCGGACACGGTTGCACGTCTCCAGATTCGCAACATGCAAGTCAACTTCTCGGAGAGTGGCAACTTCCAGGCAAAGGTCACGCCTTACGGGCGGGACACCTACACGTACACCTACTCAGGAAAGACCCTCGGGCTGCCTTCGGCAAACATCGGGGCCATCGGAATTGAAGATGGCAAGTTCCGGTTCCCGGTGATGTCGCAGAACACCACCGTGGACATCGAACTCTTCTCGGACTCGCCGCTCCCCTGCGTCTTCTTGAGTGCAGATTGGGAAGGCTACTATGTCCGACGAAGCCAGGCGGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
720208d00b0a4807412a2e60f4007dc9034b717958fec50bd036dfd9c9e7495e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9093
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage (DU_RP_I) infecting Ralstonia solanacearum Park,T.-H. 2017-09-30 — GenBank