Protein

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Genbank accession
YP_009003299.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATAPKIFASGIMLGNPKLSNEVIIPVYEAPVMPPSYTLWTGANNKYGFLGNMVTEANAPAGQFIGAVKAINHPNPAAVYSMSGQTAGLGILADTGLIYVVNGTLLAVGTRTITITATNSLGSSSTTLQIKVVGTATNVIYIDPLGGADANTGIKPSQAIKTWAGRSGKGSGTKTYLIKNGSNLVAAVTLANGETIGAYGDPSQPRAKITTTANFGVTGTSLNNATVKDLDITAAQRAIHISVGSNFDVRRCTFRVPTDGTNRAPFYTTGMTGLKLLHCWVPANSYGDNVYCRGLKNAEIAYNLLETPLGSTADNLQVTSERNSAYLCNDVWIHHNTMINMGGTSAKGNCVIEGCVRAW
Physico‐chemical
properties
protein length:359 AA
molecular weight: 37571,30430 Da
isoelectric point:9,05041
aromaticity:0,06964
hydropathy:0,01811

Domains

Domains [InterPro]
DC_1680
ATT
26–128
DC_1680 IPR011050
IPR013783
STR
52–133
IPR013783
cd11304
STR
54–133
cd11304
YP_009003299.1
1 359
Architecture
ATT
STR
ATT 26-133 | STR 135-354 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009003299.1
1 359
Domain Start End Length (AA) Confidence
N-terminal 1 32 32 0,9660
Central domain 33 348 317 0,7914
C-terminal 349 359 10 0,0927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-32
Central
33-348
C-terminal
349-359

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage vB_RleS_L338C
[NCBI] 		1414737 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009003299.1 [NCBI]
Genbank nucleotide accession
NC_023502.1 [NCBI]
CDS location
range 87176 -> 88255
strand +
CDS
ATGGCAACTGCACCGAAAATCTTCGCCAGCGGCATCATGCTCGGCAATCCCAAACTCAGCAACGAAGTGATCATCCCCGTGTACGAGGCACCCGTCATGCCTCCATCTTACACGTTATGGACCGGCGCGAATAACAAGTACGGCTTCCTCGGCAACATGGTCACCGAAGCCAATGCACCCGCCGGGCAGTTCATCGGCGCGGTCAAGGCGATCAACCATCCCAACCCTGCCGCCGTCTACTCGATGAGCGGCCAGACAGCGGGCCTCGGCATCCTGGCCGACACCGGCTTGATCTATGTGGTCAACGGCACATTGCTGGCGGTCGGCACCAGAACGATCACCATTACCGCGACCAACAGCCTCGGCAGTTCTTCGACCACGCTACAGATCAAAGTCGTCGGCACCGCCACCAACGTCATCTACATCGATCCGCTCGGCGGCGCGGACGCCAACACCGGCATCAAGCCATCCCAGGCGATCAAGACGTGGGCCGGGCGTAGCGGCAAGGGCTCCGGCACCAAGACCTACCTGATCAAGAACGGCTCCAACCTTGTCGCGGCTGTCACCCTGGCGAATGGCGAGACGATTGGCGCTTATGGCGACCCGTCGCAGCCCCGCGCGAAGATCACCACCACCGCCAACTTCGGCGTCACCGGCACGAGCCTGAACAACGCCACGGTCAAAGACCTGGATATCACCGCAGCCCAGCGCGCCATCCATATCAGCGTCGGCAGCAACTTCGACGTTCGCCGCTGCACCTTCCGGGTGCCCACGGACGGCACCAACCGCGCTCCCTTCTATACGACCGGCATGACCGGCCTGAAGCTGCTCCATTGCTGGGTGCCTGCCAACTCCTACGGCGACAACGTCTACTGCCGTGGCCTCAAGAATGCCGAGATCGCATACAACCTGCTTGAGACGCCGCTCGGCAGCACGGCTGACAACCTCCAGGTCACCTCGGAGCGCAACTCGGCCTACCTCTGCAACGACGTGTGGATACATCATAACACGATGATCAACATGGGCGGCACCTCGGCCAAGGGCAACTGCGTGATCGAAGGTTGCGTGCGTGCCTGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9dad81edf8751cadec843d8c60125b2368413ce129d7d63025e39769558b88d4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7926
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Rhizobium leguminosarum phages from western Canadian soils and complete genome sequence of rhizobiophage vB_RleS-L338C Restrepo-Cordoba,M., Halmillawewa,A.P., Hynes,M.F. and Yost,C.K. 2015-09-16 — GenBank