Protein

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Genbank accession
BBI55066.1 [GenBank]
Protein name
constituent protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYQVYKVEKPKGVNFSLEPSQLDSTMWDEASEVSFKHGKTKKVSGYEQGLGQTGVLNDGSVYPEIILPLRDDTDENYWWAYASTKQDGTGEIYRIVTKDLHQDVTPTAGIPSEPEFRWFGDTINGVPYFMKGKPYVWDGVSKFEELETFPGHVKAQVMRTYGNHMVAMDFQVDNFTPPADPQTPEEEYQAKFSPWNEGRHRSAVWWSSAINTKDLSVSWADADPTTESGWNFLGGNGGPILGGKSLRESFIIYRERAVWQMSYIGGILVFAFKELFNDVGVLGPDCVAEINGYHFVVGQSDIYMHNGVHKESVADGIVRNRIFDSIDPDHIDKVFVAVRYQEKEAWVCIPEASTNTNGRCNVAYVYNWEERHWSKRDMPDSLTSTYTILSITEGDVTWTAPSESATWEEATDLWISSYFKYNSSQWGLAFAGVTSDGKGAVYTTIDEPTWDGANFKASVEKKWIDMEDYTTTKTLNKIWPLVRGGDIDVWVAGSETTTQSPNWRYVGRFDPNKRANLGCTATGKFIHVKFEIPEKSRAELRGYWLEYKATGAR
Physico‐chemical
properties
protein length:554 AA
molecular weight: 62723,10750 Da
isoelectric point:5,01993
aromaticity:0,13357
hydropathy:-0,52202

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BBI55066.1
1 554
Domain Start End Length (AA) Confidence
N-terminal 1 61 61 0,9862
Central domain 62 260 200 0,2421
C-terminal 261 554 293 0,5673
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-61
Central
62-260
C-terminal
261-554

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage KIT05
[NCBI] 		2508208 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BBI55066.1 [NCBI]
Genbank nucleotide accession
AP019417 [NCBI]
CDS location
range 14461 -> 16125
strand +
CDS
ATGGCATACCAAGTTTATAAAGTTGAGAAGCCTAAAGGTGTCAACTTTTCACTAGAGCCATCACAATTGGATTCTACTATGTGGGACGAGGCTAGTGAAGTATCGTTTAAGCATGGTAAGACTAAGAAGGTATCTGGTTATGAACAAGGCTTAGGTCAAACTGGTGTTCTTAATGATGGTTCGGTATATCCTGAAATTATCCTCCCATTGCGAGATGATACTGATGAGAACTACTGGTGGGCTTATGCCTCAACCAAACAAGATGGTACTGGTGAAATCTACCGTATCGTCACTAAAGACTTACACCAAGATGTTACACCAACAGCAGGTATTCCTAGCGAGCCTGAGTTCCGTTGGTTTGGTGACACAATAAATGGTGTTCCATACTTCATGAAAGGTAAGCCTTACGTGTGGGATGGAGTAAGTAAATTTGAAGAACTGGAAACGTTCCCCGGACATGTTAAGGCTCAGGTTATGCGAACCTACGGCAACCACATGGTGGCTATGGACTTTCAGGTAGATAACTTCACACCTCCGGCTGACCCACAAACGCCAGAAGAAGAATATCAAGCGAAGTTCAGTCCTTGGAATGAGGGACGTCACCGCTCTGCTGTATGGTGGTCTAGTGCTATCAACACAAAAGACTTAAGTGTTTCTTGGGCAGATGCAGACCCAACTACAGAGTCCGGTTGGAATTTTCTAGGTGGTAATGGTGGACCGATTCTTGGAGGTAAATCACTTCGAGAGTCGTTCATCATCTACCGTGAACGAGCAGTATGGCAGATGTCATACATTGGCGGTATTTTAGTATTCGCCTTTAAGGAATTGTTTAACGACGTAGGTGTACTTGGCCCAGACTGTGTGGCTGAGATTAATGGCTACCACTTTGTGGTTGGTCAGTCAGACATCTATATGCATAATGGTGTACATAAAGAATCTGTAGCAGACGGTATTGTACGTAACAGAATCTTTGATTCTATTGACCCAGACCATATTGACAAGGTATTCGTAGCAGTACGTTACCAAGAGAAAGAGGCATGGGTATGTATTCCAGAAGCATCAACAAATACAAATGGTCGTTGTAACGTAGCATATGTATATAACTGGGAAGAACGTCACTGGTCTAAACGAGATATGCCAGATTCATTGACTTCTACTTACACTATCCTATCTATTACAGAGGGTGATGTTACATGGACAGCGCCATCAGAAAGCGCTACATGGGAAGAAGCCACTGACTTATGGATTAGTTCATACTTTAAGTATAACAGCTCTCAGTGGGGCTTAGCGTTCGCTGGTGTTACCTCTGATGGTAAGGGTGCTGTATATACAACTATTGATGAACCAACTTGGGATGGTGCTAACTTTAAAGCTAGTGTAGAGAAGAAATGGATTGACATGGAAGATTATACAACCACTAAGACACTCAATAAGATTTGGCCTCTCGTTCGGGGTGGTGATATTGATGTGTGGGTAGCTGGTAGTGAGACAACTACACAATCTCCTAACTGGAGGTATGTCGGTAGGTTCGACCCTAATAAGCGAGCTAATCTGGGTTGCACAGCAACAGGTAAGTTCATTCATGTCAAGTTCGAAATCCCAGAAAAGAGTCGTGCAGAATTGCGTGGCTATTGGTTAGAATATAAAGCAACAGGAGCTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
310f3a159003df7f5c3335532367ef95a289722724fd8950adbfe1f560be7e1f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8474
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus bacteriophage KIT05 Vo,T.T.A., Pham-Khanh,N.H. and Kamei,K. 2022-06-15 — GenBank