Protein

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Genbank accession
AFF28255.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,67
Protein sequence
MKTQKLLISLVLFITTLTTFAQNDLKVRTRSADGYLQTDYFLNVPKRLTIPSGPTETLNSSLIDTTKQASLFFNTTTKKLRAFDPVGMSWADVVAGGSDSPIKLNNSTIYDSRTSNYSNNNSIFLGDMAGRNATNANNSIILGYYSGNNATNSRNSVFIGNSTGNGATAANESVFLGSYAGDGATGAHSSIMLGENAGYNATGASMSILLGKQAGKGFTDNGNVNTIGTNNIIIGRNISLPNAFTNGINIGGILFGTGTNAITGLNPVITPVIGGKIGIGVIPTTSTFEVAGTGSFTGTVKGSNAINANEFATKGQMDAQSVIEGVDVSGRLAYRLRGIGALAGGAGSINLSSAPVSQAVGENSVIIGVGAADATSSIKANGNNSVIIGGNAGQGGTLSTTGNGILLGGNVYAGGKISSNGTTIKLDAANSNVTNNGTIIASSISQGTHTFESATSIFSSYLTSPSFEFNLRPNILLGVRFDRGAIKLGKGTNEDSESNATMIGGYYHASISDMSTNITSNGRGNVIIGGFEQTSSTNKTINKFAYGNGSVLLGGTGLQSNTHAAVTMGVYNDPIITTKRNSYVATDPIFIIGNGTSDVARSNSYVMHGNGNSLQIGTATAKQFNVSNLNEAPTSATDTGTIGEIRITADYIYICVGANEWKRTALSTW
Physico‐chemical
properties
protein length:669 AA
molecular weight: 68862,70560 Da
isoelectric point:8,82155
aromaticity:0,06876
hydropathy:-0,06846

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFF28255.1
1 669
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,2489
Central domain 64 296 234 0,8699
C-terminal 297 669 372 0,4065
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-296
C-terminal
297-669

Taxonomy

  Name Taxonomy ID Lineage
Phage Sphingomonas phage PAU
[NCBI] 		1150991 No lineage information
Host Sphingomonas paucimobilis
[NCBI] 		13689 Bacteria > Proteobacteria > Alphaproteobacteria > Sphingomonadales > Sphingomonadaceae > Sphingomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFF28255.1 [NCBI]
Genbank nucleotide accession
JQ362498.1 [NCBI]
CDS location
range 181144 -> 183153
strand +
CDS
ATGAAAACTCAGAAACTATTAATATCGTTAGTTCTATTTATTACGACATTAACGACATTCGCTCAAAACGATTTGAAAGTTCGTACAAGATCAGCAGATGGATATCTTCAAACTGATTACTTTCTAAACGTTCCAAAAAGATTAACAATTCCTTCAGGTCCTACTGAAACATTAAATTCGAGTTTAATCGATACTACTAAACAAGCTTCATTATTCTTCAACACTACAACTAAGAAACTTAGAGCATTCGATCCAGTTGGAATGTCATGGGCTGATGTTGTAGCTGGAGGAAGTGACAGTCCTATTAAACTTAACAATAGCACTATTTACGATTCTAGAACTTCTAATTACTCAAACAATAACAGTATTTTTCTAGGTGATATGGCTGGAAGAAATGCCACTAATGCTAACAATTCGATAATACTTGGTTATTATTCTGGTAATAATGCAACTAATTCTAGAAATTCTGTATTTATTGGTAACAGTACAGGTAATGGTGCTACAGCCGCAAACGAATCTGTATTTCTAGGTAGCTACGCAGGTGATGGTGCTACAGGTGCACATAGCTCAATAATGTTAGGAGAAAATGCAGGTTATAATGCAACAGGTGCTAGTATGTCTATTCTTTTAGGGAAACAGGCAGGTAAAGGTTTTACTGATAATGGTAATGTAAATACTATAGGAACTAATAATATCATCATTGGTAGAAATATATCATTACCAAACGCATTCACGAATGGTATAAATATCGGTGGTATTCTTTTTGGTACTGGAACTAATGCTATTACAGGACTTAATCCAGTAATAACCCCAGTAATTGGTGGTAAAATTGGTATAGGTGTTATACCAACAACTAGTACTTTTGAAGTTGCTGGAACTGGTTCGTTTACTGGAACTGTTAAAGGTTCTAACGCAATAAATGCTAACGAATTCGCAACAAAAGGTCAAATGGACGCTCAATCAGTTATAGAAGGTGTTGACGTCAGTGGTAGATTAGCTTATAGATTGAGAGGTATTGGAGCGTTAGCTGGTGGTGCTGGATCAATAAATCTTTCATCTGCTCCAGTTAGTCAAGCTGTTGGTGAAAATTCAGTAATCATAGGTGTTGGTGCTGCTGATGCAACATCGTCAATAAAAGCCAATGGGAACAATTCCGTTATCATTGGAGGTAATGCAGGACAGGGTGGTACATTAAGTACAACAGGTAACGGTATTTTATTAGGAGGTAATGTATATGCAGGTGGAAAAATATCATCAAATGGTACGACTATAAAATTAGATGCAGCTAATAGTAATGTAACAAACAATGGTACTATCATAGCATCAAGTATATCACAGGGTACGCATACATTTGAGTCAGCTACATCGATTTTTTCATCATATTTAACGTCACCTTCGTTCGAATTTAATCTTAGACCTAATATACTTTTGGGTGTTAGATTTGATAGAGGTGCTATTAAACTAGGTAAAGGTACAAACGAAGACAGTGAATCAAATGCTACTATGATAGGTGGGTATTATCATGCTAGTATCTCAGACATGTCAACCAATATAACATCAAATGGTAGAGGTAATGTCATCATTGGAGGTTTTGAACAAACATCATCTACTAACAAAACTATTAATAAATTTGCATACGGTAATGGTTCAGTTTTACTTGGTGGTACTGGATTACAATCTAATACACATGCGGCTGTTACTATGGGTGTATATAACGATCCAATAATAACAACTAAACGAAACAGTTATGTTGCTACTGATCCTATTTTCATAATAGGTAATGGTACAAGTGATGTAGCACGTAGTAATTCGTACGTGATGCATGGTAACGGTAATTCTTTACAGATTGGAACAGCTACAGCTAAACAATTTAACGTATCTAATCTTAATGAAGCACCAACCTCAGCTACAGACACAGGTACGATAGGTGAGATAAGAATAACAGCTGATTACATTTACATATGCGTTGGTGCTAACGAATGGAAACGTACAGCATTATCAACTTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
06b1fdf1f5aee7aef041db0f9a36a5a019781137227b5fc2125c253f1963803c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6605
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50