Protein

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Genbank accession

WPK17893.1 [GenBank]

Protein name

tail collar domain protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Evidence RBPdetect

Probability 0,84

Evidence RBPdetect2

Probability 0,90

Protein sequence

MWAAGTRPGQNKSYLSIKAWGNAFNASGNRARETVFQVSDGQGYHFYSQRVAPGSGSTVGPIQFRVNGGLLTSGGITSSGSIVTESSLVANNGLSVNGQAKFGGTADALRIWNAEYGAIFRRSETSFYIIPTLKDAGKSGGISNLRPFTINLANGSVMIGNHTQAGKNLLTIDNVSKFVQTDVRLRVNMDSDGIVLNASSQASSNFIQGRKADVTKWYLGIGDGGNVVRMHNYTYSHGIALNADTVDITKPLKINNIRIGTDGNITGGSGNFANLNTTINNLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDADLYPKLAAVYPSGTLPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASSTDLGTKTTSSFDYGSKTTSSFDYGTKTSNTTGNHSHTVSGNTSSAGAHQHSQTGPRGTNNQPTGIYPNGSTRISGTLVVGFGLSNGVVPGTSQYIAKSSTEGNHTHTWSGTTSSTGNHAHTVGIGAHSHSVGIGAHTHTVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRLA

Physico‐chemical properties

protein length:	541 AA
molecular weight:	56519,58070 Da
isoelectric point:	9,48873
aromaticity:	0,07209
hydropathy:	-0,35933

Domains

Domains [InterPro]

DC_0128
RBD
1–114

DC_0128 IPR051934

DC_0163
STR
81–470

DC_0163

G3DSA:6.20.80.10
STR
192–250

G3DSA:6.20.80.10 SSF88874 SSF88874

IPR048388
ATT
193–267

IPR048388 IPR037053 DC_0163

IPR011083
ATT
293–340

IPR011083

WPK17893.1

1 541

Architecture

RBD

STR

ATT

STR

ATT

STR

RBD 1-80 | STR 81-192 | ATT 193-267 | STR 268-287 | ATT 288-341 | STR 342-541

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0128	RBD	DC_0128	1	114	Novel HMM	DC_0128	C-terminal	Low	Positional only	16 proteins / 16 hits
DC_0163	STR	DC_0163	81	470	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits
IPR051934	Unmapped	-	149	541	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	192	250	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	193	267	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
SSF88874	STR	SSF88874	281	434	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	288	341	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	293	340	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	442	540	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
DC_0163	STR	DC_0163	453	541	Novel HMM	DC_0163	Central	Low	Positional only	47 proteins / 47 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

WPK17893.1

1 541

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	349	349	0,0013
Central domain	350	530	182	0,0663
C-terminal	531	541	10	0,9969

Note: Constraints were applied during segmentation.
Fixed 258 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-349

Central
350-530

C-terminal
531-541

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage BYEP02 [NCBI]	3093892	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Escherichia coli [NCBI]	562	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

WPK17893.1 [NCBI]

Genbank nucleotide accession

OR757454 [NCBI]

CDS location

range 2699 -> 4324
strand -

CDS

TTGTGGGCCGCCGGTACTCGCCCAGGTCAGAATAAAAGTTATCTATCTATCAAAGCATGGGGTAATGCCTTTAATGCATCTGGCAATCGTGCTCGTGAAACAGTTTTTCAAGTATCAGATGGACAAGGTTACCATTTTTATTCTCAACGAGTTGCTCCCGGATCAGGTTCTACCGTCGGACCTATTCAATTTCGAGTTAATGGTGGTTTATTAACTTCTGGTGGTATTACATCATCTGGTTCTATTGTTACTGAATCAAGTTTAGTTGCAAATAATGGATTATCTGTAAATGGTCAGGCTAAATTCGGTGGAACAGCAGATGCGTTGAGAATTTGGAATGCTGAATACGGCGCTATTTTCCGTCGTTCAGAAACTAGCTTTTATATTATTCCTACTCTTAAAGACGCTGGTAAAAGTGGTGGAATAAGTAATTTACGCCCATTTACCATCAATCTTGCAAATGGCAGTGTTATGATTGGTAATCATACACAAGCTGGAAAAAATTTGCTTACTATTGATAATGTATCAAAATTCGTTCAGACTGATGTTAGACTTCGTGTTAACATGGATTCTGACGGTATTGTGCTCAACGCATCATCTCAAGCATCATCTAACTTTATTCAAGGACGTAAAGCAGATGTAACAAAATGGTATTTAGGTATTGGCGATGGTGGTAATGTTGTTCGTATGCATAATTACACTTACTCCCACGGCATTGCATTGAATGCTGATACAGTCGATATTACTAAGCCTCTTAAAATTAATAATATTCGAATTGGTACTGACGGTAACATCACAGGTGGTTCTGGTAATTTTGCTAACTTGAATACCACAATAAATAACCTTAAGACGGATATTGTCTCAAGTTATCCTATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGTTATGCCATAATGGAAGGTCAAACATTTGATGCTGACTTGTATCCTAAGTTAGCTGCGGTGTATCCTTCCGGCACTCTGCCTGATATGCGTGGTCAAACTATCAAGGGTAAACCATCCGGGCGTGCTGTATTGAGTACAGAAGCAGACGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAGACCACTTCTAGTTTTGATTACGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGTAACCATAGCCATACAGTGAGTGGTAATACTAGTTCCGCTGGTGCGCACCAACACTCACAAACCGGTCCAAGGGGTACTAATAATCAACCCACAGGAATATATCCTAATGGATCTACTCGAATTAGCGGAACCCTGGTTGTTGGTTTTGGCCTAAGCAACGGTGTTGTGCCTGGTACAAGCCAATATATTGCAAAGTCGTCAACAGAAGGTAACCATACCCATACTTGGTCTGGTACTACTAGCTCTACGGGTAACCACGCGCATACTGTAGGTATCGGTGCCCATAGCCATTCGGTCGGTATTGGTGCTCATACCCACACGGTAGCTATTGGTTCGCACGGACATACTATCACTGTAAATAGTACAGGTAATACAGAAAACACGGTTAAAAACATTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Tertiary structure

PDB ID

cfaa0d11328625d617c9c380daf9242ae9b7c19012df1117b17e75dd3872a8d9

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6803

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence