Protein

View in Explore
Genbank accession
YP_009056445.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MADFEFENFLNPLNPMRFQANLGSERERRYKEGDKVVKLSLARVTKVNYKYNTVEVTTTVYKNSTGGNPNDNGKFSARLPVAFGGTTPDGNVYGSNTLVTVGSLVLVGYLEGSKDQPIVLNIYGDTDNQSQLTRTTFSSADESQEAIQQELWQLFTLYPSMTYRNIDGHGNQEVTFSGKSFLYITDSDPDNSYVQDGGFDYDDLPSSRYANGELIEPKSAASPTVLYVHQGIYESHRVTFFIKADGTVRMGSRHKEGTGITFMEMTTDGTFHIVQNKGTTDPEGEPEKFSKIGINDDGDVIMKSREHELAVNSKGVYINGKPISSWGGGGEPGENPLDDIINDLTKIKTEITVVNGKIDMKVSREELNVDLEEVERKSKELYDGAKKEIDDLNEVILNLDEYIDGAFQDGIIDQAEAKVIESYINSLRTEKVDLDVKYEEMISNEYLPTEQHDFLEVAKGAYDSKFAELIDIINAAIQDGKITDEDRQAVNGAFQDYRTAISNLSAAFQKAADAIALAMAKSAEDAARKYTEAQFTILDSEIKSRVKSEEFTKAVTDVNTKIADVEKKATEEIQNTNDRVTEVEKKVPYKAEIFSTNGLVFRDGLINTTLFCKVFRGDQEITDSLDASRFKWTRVSDDSAGDDAWNSANAAGKKSVVITAADVKARATFNCEIQDE
Physico‐chemical
properties
protein length:676 AA
molecular weight: 75069,25790 Da
isoelectric point:4,65252
aromaticity:0,08580
hydropathy:-0,54675

Domains

Domains [InterPro]
DC_0209
STR
16–676
DC_0209
Coil
Unmapped
357–384
Coil Coil IPR007110
YP_009056445.1
1 676
Architecture
STR
STR 16-676
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009056445.1
1 676
Domain Start End Length (AA) Confidence
N-terminal 1 120 120 0,7785
Central domain 121 665 546 0,2802
C-terminal 666 676 10 0,0655
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-120
Central
121-665
C-terminal
666-676

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage Bobb
[NCBI] 		1527469 Uroviricota > Caudoviricetes > Herelleviridae > Agatevirus > Agatevirus bobb
Host Bacillus pumilus
[NCBI] 		1408 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009056445.1 [NCBI]
Genbank nucleotide accession
NC_024792.1 [NCBI]
CDS location
range 103593 -> 105623
strand -
CDS
ATGGCAGATTTTGAATTTGAAAACTTCCTAAACCCGTTAAACCCTATGAGGTTTCAAGCTAACTTAGGATCGGAACGAGAACGTAGATATAAAGAGGGAGATAAAGTAGTAAAGCTCTCCCTTGCCCGAGTCACAAAAGTTAACTATAAGTATAACACGGTTGAGGTTACAACAACAGTCTATAAGAACTCGACAGGAGGTAACCCTAACGACAACGGAAAGTTCTCGGCACGTCTCCCAGTAGCATTCGGAGGAACAACACCGGACGGAAATGTGTATGGCAGCAATACGTTAGTAACTGTTGGATCACTCGTGCTGGTTGGTTACCTCGAAGGAAGCAAAGATCAACCTATCGTTTTGAATATTTACGGGGACACAGATAACCAGTCACAACTAACACGAACAACGTTCTCTAGCGCTGATGAGTCTCAAGAAGCCATTCAGCAAGAGTTGTGGCAGTTATTTACTTTATATCCTTCTATGACCTATAGAAACATAGACGGTCACGGAAACCAAGAAGTAACCTTTTCAGGTAAGTCCTTCTTATACATAACTGACTCTGATCCTGACAATTCTTATGTACAGGACGGAGGATTCGATTATGACGACCTTCCTAGTTCCCGGTATGCAAACGGAGAACTGATAGAGCCAAAATCAGCAGCCTCCCCTACTGTGCTTTACGTCCATCAAGGTATCTACGAGAGCCACAGGGTAACATTCTTCATTAAGGCAGACGGTACAGTGAGAATGGGCAGCAGACATAAAGAGGGGACCGGAATCACCTTTATGGAGATGACTACCGATGGTACGTTCCATATTGTACAAAATAAAGGGACTACCGATCCCGAAGGAGAGCCGGAGAAGTTCTCTAAGATCGGAATAAACGATGACGGCGATGTCATCATGAAGTCAAGAGAACATGAACTTGCCGTCAACAGCAAAGGTGTATACATAAATGGCAAACCTATCTCTTCTTGGGGTGGAGGTGGAGAGCCCGGAGAGAACCCACTAGACGACATCATTAATGATCTCACGAAGATAAAAACAGAAATAACGGTCGTTAATGGTAAAATAGATATGAAGGTTAGTAGAGAAGAGCTTAATGTCGACCTCGAAGAAGTTGAGAGAAAGTCAAAGGAGCTTTATGACGGAGCTAAGAAAGAGATAGACGACCTCAACGAGGTGATCTTAAACCTTGACGAGTACATTGACGGAGCCTTCCAAGACGGGATAATTGACCAAGCAGAAGCTAAGGTCATTGAATCATACATAAACAGCCTTAGAACTGAAAAGGTTGATCTCGATGTCAAATATGAAGAAATGATTAGCAACGAGTACCTGCCTACAGAGCAGCACGATTTCTTAGAAGTCGCTAAAGGTGCCTATGATAGTAAGTTTGCAGAGCTCATTGACATCATTAATGCAGCAATTCAGGACGGGAAAATAACAGACGAAGATCGTCAAGCAGTAAACGGAGCTTTCCAAGACTACAGAACAGCCATTTCTAACCTCTCTGCGGCGTTTCAAAAGGCAGCAGATGCAATAGCCCTAGCGATGGCTAAATCGGCTGAGGATGCCGCTAGGAAGTATACAGAGGCACAGTTCACTATCCTAGACAGCGAGATTAAAAGTCGAGTAAAATCTGAAGAATTTACTAAAGCCGTTACAGATGTTAACACCAAAATAGCGGATGTCGAGAAAAAAGCAACAGAAGAGATACAAAACACTAATGACCGAGTAACAGAAGTCGAAAAGAAGGTGCCTTATAAGGCTGAGATTTTTAGTACCAACGGACTTGTGTTTAGGGACGGACTAATCAACACTACGCTGTTCTGTAAAGTGTTTAGAGGAGACCAAGAGATTACAGACTCACTTGACGCTAGCCGCTTTAAATGGACAAGAGTATCGGATGACTCTGCGGGAGACGATGCTTGGAATAGCGCTAACGCCGCCGGAAAAAAATCTGTAGTGATTACCGCAGCAGACGTAAAGGCTCGAGCAACATTTAACTGTGAAATTCAAGACGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6431157ed7da332003dbe26b9bd94c087f334cf135f52c67aae05a423f30df8c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6817
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bioinformatic genomic analysis of Bacillus phage Bobb Lewis,H.M.N., Temple,L., Barth,R.N., Bowles,K.M., Churchin,D.I., Scott-Croshaw,C., Glasgow,G.H., Gloe,M.W., McGough,T.M., Nutbrown,S.A., Romulus,S.R., Sanders,K.A.M., Diachok,C.R., Serigano,J.P., Shin,D., Suresh,M.H., Conner,A.R.N., Korba,R.M., Livermore,R.J., Rohlf,M.B., Utterback,S.D. and Wilson,V.E. 2015-07-03 — GenBank