Protein

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Genbank accession
YP_009612734.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAVGEIQISALPQASLPIDLSDIFHLKQGIEDKRCTLEQLLAPHASLRNNPHGVTKVHVELGNVINALQLVAANNLSDVVSVEEARQNLNILSSDEVNTLIQNHINDKNNPHNTNKIQVGLSNIQNWTYSNSYSEDADKYATAKAVNALYRAIQNSYPIGTIHLSVNPANPSTYLLCGGTWELVSKGRSLVGYDTDTRPVESVFGSATVTLTQNNIPSHTHSVLLTGGGHSHNATVVISSFDYGTKSTSSFDYGSKATNDSGSHAHNVNGSVSSAGSHSHRIPLRGSDRGGVNAITATADAGVGNASYTDFDGVHTHTFNVNSSVGGNHSHSVYIGAHGHSVAIGSHGHSGTVTVQSSEHTHSGTTGSFGAGQAFNIEQPSYVVYVWKRTA
Physico‐chemical
properties
protein length:391 AA
molecular weight: 41403,79950 Da
isoelectric point:6,31347
aromaticity:0,06138
hydropathy:-0,32251

Domains

Domains [InterPro]
DC_1039
STR
1–391
DC_1039
IPR051934
Unmapped
115–359
IPR051934
IPR053827
ATT
154–270
IPR053827
YP_009612734.1
1 391
Architecture
STR
ATT
STR
STR 1-153 | ATT 154-270 | STR 271-391
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf13
[NCBI] 		2024316 Uroviricota > Caudoviricetes > Andersonviridae > Mooglevirus > Mooglevirus Sf13
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009612734.1 [NCBI]
Genbank nucleotide accession
NC_042017 [NCBI]
CDS location
range 78060 -> 79235
strand -
CDS
ATGGCAGTCGGTGAAATTCAAATTAGTGCATTGCCTCAAGCCTCGTTGCCTATTGATTTAAGTGATATCTTTCACCTGAAGCAAGGTATTGAGGATAAACGATGCACACTTGAGCAATTACTTGCTCCACACGCATCTTTAAGAAATAACCCACACGGTGTTACAAAGGTTCACGTAGAACTCGGTAATGTTATTAACGCACTCCAATTAGTGGCTGCTAATAACTTGTCAGACGTGGTTAGTGTTGAAGAGGCTAGACAGAACCTTAATATTCTATCAAGTGATGAAGTTAATACTCTTATTCAGAATCACATTAATGACAAGAATAACCCTCACAACACTAACAAGATTCAAGTAGGTTTGTCTAATATCCAAAACTGGACATATTCAAACTCTTACTCCGAAGATGCTGATAAGTATGCTACTGCAAAAGCTGTGAATGCTTTATATAGAGCTATCCAGAATAGCTATCCAATTGGTACTATTCATTTATCAGTTAACCCTGCAAACCCATCTACATATTTACTTTGTGGTGGTACTTGGGAGTTAGTTTCTAAAGGAAGGTCTCTTGTTGGTTATGACACAGATACAAGACCTGTAGAATCAGTATTTGGTTCTGCTACTGTAACACTTACACAAAATAACATTCCAAGTCACACACACTCTGTATTGTTAACTGGTGGTGGACACTCCCATAATGCAACAGTAGTAATTTCTAGCTTTGACTATGGGACTAAGAGCACATCAAGTTTTGATTACGGTTCTAAGGCCACAAACGACTCTGGAAGCCACGCTCATAACGTTAATGGTTCTGTAAGCAGTGCTGGTAGTCACAGCCACAGGATTCCATTGAGGGGTTCTGATAGGGGTGGTGTGAATGCTATTACGGCAACGGCTGATGCAGGTGTTGGAAATGCGTCATATACAGACTTTGATGGGGTTCACACACATACCTTCAACGTTAATTCTTCAGTTGGTGGTAACCACTCTCACAGTGTGTATATCGGAGCACATGGGCACAGTGTTGCAATTGGTTCACATGGACACTCAGGTACTGTGACAGTTCAATCTTCTGAGCACACTCACTCAGGTACAACTGGTTCATTTGGTGCTGGACAAGCATTTAATATTGAGCAACCTTCTTATGTTGTATATGTTTGGAAGAGAACTGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c9ef11135a17118353cfb116325fc6ad38db31daab3981b2e41cddab9fa341e7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7152
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank