Protein

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Genbank accession
YP_010660085.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,89
Protein sequence
MALQSRTITVGADRDSNNGGKNYVSGQVIYIKDELGVLAPIFKDIDGLDPIPQNTISNVTNAKGQFTFFIEEGNYTAEYNDQSTPLFVFGADYFNNQIDFVTNQILSNTQPYSAGNFTDGFTFTELNQYGNATVNDGGTDYATTFWYIGGTLPHAVAPLTNPRDFPLLYQQRDLITVGADRDSNNGGKNYVSGQVIYIKDELGVLAPIFKDIDGLDPIPQNTISNVTNAKGQFTFFIEEGNYTAEYNDQSTPLFVFGADYFNNQIDFVTNQILSNTQPYSAGNFTDGFTFTELNQYGNATVNDGGTDYATTFWYIGGTLPHAVAPLTNPRDFPLLYQQRDFNSAEFVATKTTESAQDFIDSFALKVFQSPAGGALTEIQTRTVETGDAYEVRKTSDDSLATIYSDSAGAAEIIQNGTDNVSSVDGVVDFYIADGYYYIEVAGIKGNFKVSSGSTSTKTEFKREWYVNPSTGIDSPLMGTSDLTPFKTIQYAFDQLPDIISHQQTINISSGLCNESSRDSSDMPRPAIFYPQGKYIARRTSQSGSDLSGSVVIKGAGVGSTIIETDPPNGYVDGVYVSGTEIAIQDLTVRPKSGESTSTCITTHRGAYVHGRNLAVGGTGSSLGLVCESGAWAEMVSCAITGSDNKDVVVFPTSGCSLAGDNSDIGDVQSSGFIQFAQQLTVNGDVSVTSSGNCQITSNVLSNAVVFNGAVTVSNAPLSAAFATFNESITATLSTIKLSACSYQKSITLFGGGLDLDASNSFVSPNTNNDTLAPVVLRDGARIDKDSASIIRNSAGDEVGADFGNLSVTVTSDSFSIPVSITGRHIDLELIGSTSNRFGATLPATGDLGVYPDGTALRIAGAGFNVEIVESTTANIPGGSITVGGLSGGYSGVTFVYSSRSGKWNLQSVGLVNP
Physico‐chemical
properties
protein length:913 AA
molecular weight: 97039,46240 Da
isoelectric point:4,28756
aromaticity:0,10077
hydropathy:-0,16232

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010660085.1
1 913
Domain Start End Length (AA) Confidence
N-terminal 1 513 513 0,9816
Central domain 514 801 289 0,9165
C-terminal 802 913 111 0,8875
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-513
Central
514-801
C-terminal
802-913

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage HS5
[NCBI] 		1357709 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010660085.1 [NCBI]
Genbank nucleotide accession
NC_070825.1 [NCBI]
CDS location
range 1 -> 37730
strand +
CDS
ATGGCTTTACAATCAAGAACGATTACAGTGGGCGCTGATAGAGATTCGAATAACGGAGGCAAGAATTACGTTAGTGGGCAAGTTATCTATATCAAAGATGAATTAGGTGTTTTAGCGCCTATATTCAAAGATATTGACGGCTTAGACCCAATCCCACAAAACACAATATCAAACGTAACAAATGCGAAAGGGCAGTTTACTTTCTTTATTGAAGAAGGAAACTACACTGCTGAATACAATGACCAATCAACACCGCTTTTTGTGTTTGGCGCTGATTACTTTAATAATCAAATTGACTTTGTAACAAATCAAATACTATCTAACACTCAACCATATTCGGCTGGCAACTTCACAGATGGATTCACATTCACAGAGTTGAATCAGTACGGCAACGCCACAGTAAATGATGGCGGCACTGATTACGCTACAACATTTTGGTACATTGGCGGCACGTTACCACATGCAGTCGCGCCGCTTACAAATCCGCGTGACTTCCCTTTGCTTTATCAGCAAAGAGATTTGATTACAGTGGGCGCTGATAGAGATTCGAATAACGGAGGCAAGAATTACGTTAGTGGGCAAGTTATCTATATCAAAGATGAATTAGGTGTTTTAGCGCCTATATTCAAAGATATTGACGGCTTAGACCCAATCCCACAAAACACAATATCAAACGTAACAAATGCGAAAGGGCAGTTTACTTTCTTTATTGAAGAAGGAAACTACACTGCTGAATACAATGACCAATCAACACCGCTTTTTGTGTTTGGCGCTGATTACTTTAATAATCAAATTGACTTTGTAACAAATCAAATACTATCTAACACTCAACCATATTCGGCTGGCAACTTCACAGATGGATTCACATTCACAGAGTTGAATCAGTACGGCAACGCCACAGTAAATGATGGCGGCACTGATTACGCTACAACATTTTGGTACATTGGCGGCACGTTACCACATGCAGTCGCGCCGCTTACAAATCCGCGTGACTTCCCTTTGCTTTATCAGCAAAGAGATTTCAATAGCGCTGAATTTGTAGCAACAAAAACAACCGAAAGCGCTCAAGATTTTATTGACTCATTCGCGCTTAAAGTATTTCAATCGCCCGCTGGTGGAGCGCTAACAGAGATACAGACGCGCACAGTTGAGACTGGTGATGCTTACGAAGTGAGAAAAACCTCTGATGATTCACTGGCTACCATTTACAGTGATTCCGCTGGCGCTGCTGAAATTATTCAAAACGGTACTGACAATGTATCCAGTGTCGACGGGGTTGTTGATTTTTACATTGCTGATGGCTATTATTACATCGAGGTTGCAGGTATTAAAGGTAACTTTAAGGTATCTTCTGGCTCTACTTCAACAAAAACAGAATTTAAAAGGGAGTGGTATGTAAATCCGAGCACAGGTATCGATTCACCATTAATGGGAACATCTGATTTAACACCATTCAAAACAATACAGTACGCATTCGACCAGTTGCCTGATATTATTTCACACCAACAGACTATTAATATTTCCAGCGGTTTGTGCAATGAGTCGTCAAGAGATTCCAGCGATATGCCAAGGCCTGCTATATTCTACCCGCAAGGCAAATACATTGCTCGTAGAACATCTCAGAGTGGCAGTGACCTCTCAGGGTCTGTGGTTATTAAAGGCGCTGGCGTAGGCAGCACTATTATAGAGACAGATCCACCTAACGGCTATGTGGATGGCGTTTACGTATCAGGCACAGAGATTGCTATACAGGATTTAACCGTAAGGCCAAAATCTGGCGAGAGCACAAGCACGTGCATAACAACCCACAGGGGCGCTTACGTACACGGCAGAAACTTAGCTGTTGGTGGTACTGGTTCAAGTTTGGGGTTGGTTTGTGAATCGGGTGCGTGGGCTGAAATGGTTAGCTGTGCAATAACAGGAAGTGATAACAAAGATGTTGTTGTATTTCCAACGTCTGGTTGTAGCTTGGCTGGTGATAATAGTGATATTGGTGATGTTCAATCATCTGGCTTCATACAATTTGCGCAACAGTTAACTGTAAACGGTGACGTATCGGTAACCTCTAGCGGCAACTGCCAGATAACAAGTAACGTACTTTCTAACGCAGTTGTATTTAATGGCGCGGTAACTGTTTCAAATGCACCTTTATCGGCAGCGTTCGCAACATTCAACGAATCAATAACAGCAACACTATCAACAATAAAGCTATCCGCTTGTAGTTATCAAAAATCTATCACTTTATTTGGTGGTGGGCTTGATTTAGATGCTAGCAATTCATTCGTAAGCCCAAATACAAACAACGACACCTTAGCACCTGTTGTACTTAGGGATGGGGCGAGAATAGATAAAGATTCAGCTTCCATAATAAGAAACAGCGCAGGTGATGAGGTTGGCGCAGACTTTGGCAACCTTTCTGTCACAGTAACCTCTGATAGCTTTTCAATACCTGTTTCTATTACGGGGCGGCACATTGATTTGGAATTGATAGGCTCCACTTCAAATAGGTTTGGGGCAACATTACCTGCCACTGGGGATTTAGGTGTTTATCCTGATGGTACAGCTTTAAGGATTGCTGGTGCTGGATTTAATGTAGAAATAGTTGAATCAACTACAGCAAATATACCCGGTGGCTCAATAACTGTTGGCGGCCTTTCTGGTGGGTATTCAGGGGTGACTTTCGTTTATTCGTCTAGGTCTGGTAAGTGGAATTTGCAATCTGTTGGGTTAGTTAACCCGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b9070f56555199fb49b3a05b287c484c56e0482dcf50f909308c8408164f0022
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2938
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudoalteromonas phage genomics Duhaime,M.B. and Sullivan,M.B. 2010-07-08 — GenBank