Protein

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Genbank accession
QDJ99943.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGFFAGKFSDGKTVLSLTNNNGGDTNEHYSPGGNTIFHSDMPFVLVDGTYEAALGNAGNGYFVCAMPPDIINMKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQYLTFAEEPSRAFAAVGLSSAFAIGDSLASGTYIYNSSIGHEESIARQGTGGTLIQGSDFGIVRPGGFVPAGEAIARAYDLLGFPKGSSTVPLDGGNAKYWDPNWYNPIGSAGRGHNHFYVCSSNIRSYIGKKREVPANTNVFYNPSNLVYACRGSASNMASQSVNTVYVQDWYNITPTKVIWYVLNLRYSNGNISVSGTPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDTTARCEFIGSNNGSLWSPVNYGGAASQISIYKFNAGKQWYVDTNTNSIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPSYPGTGDYYLPLSTVWLGLPNAHSTIILTSEVIMGNINTAGQPIRTYAGSAWQVQGRRQQSYTAGDGVFHQILTLPPGHLVPYHGTSSYSYWQVWASSPEMEFRRNGYIYTVKNLGNGNVEFGVIIHAGSQAAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:590 AA
molecular weight: 63655,08250 Da
isoelectric point:6,86197
aromaticity:0,12373
hydropathy:-0,20305

Domains

Domains [InterPro]
IPR059609
RBD
1–590
IPR059609
QDJ99943.1
1 590
Architecture
RBD
RBD 1-590
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDJ99943.1
1 590
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2397
Central domain 11 247 238 0,9299
C-terminal 248 590 342 0,5915
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-247
C-terminal
248-590

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS-26175I
[NCBI] 		2576478 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus ev26175I
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ99943.1 [NCBI]
Genbank nucleotide accession
MK907267 [NCBI]
CDS location
range 25826 -> 27598
strand -
CDS
ATGGGTTTTTTCGCAGGAAAGTTTAGTGATGGTAAAACAGTGTTATCACTAACAAATAATAATGGTGGAGACACCAATGAGCATTACAGTCCTGGGGGTAACACAATATTTCACTCTGATATGCCCTTCGTTCTAGTAGATGGAACATATGAGGCTGCTCTAGGTAACGCTGGTAATGGGTATTTTGTTTGTGCGATGCCTCCTGATATCATTAATATGAAGTCTAATGATCCCGGTAGAGTAATCCTTACTGCTATTGAGATTAATGGTACACATAGGGGGTTTCTCAATGGTACACAATCGCAGGTAGGTCAGTATCTTACTTTTGCAGAAGAGCCCTCACGAGCATTTGCTGCTGTAGGACTAAGTTCCGCCTTTGCTATTGGGGATAGTTTAGCTAGTGGTACTTATATATACAATAGTTCAATAGGTCATGAAGAATCTATAGCACGTCAAGGTACAGGGGGTACACTAATTCAGGGTTCTGATTTTGGTATAGTAAGGCCAGGTGGCTTTGTACCTGCAGGCGAAGCTATTGCGAGAGCTTATGACTTACTAGGCTTCCCTAAGGGGTCTAGTACTGTACCTTTGGATGGTGGAAATGCTAAATACTGGGATCCTAACTGGTATAACCCTATTGGGTCTGCCGGTAGGGGGCATAATCATTTTTATGTATGTAGCTCTAACATTCGTAGCTACATCGGAAAGAAAAGAGAAGTTCCTGCGAATACCAACGTATTCTACAATCCCAGTAATCTAGTTTATGCATGTAGAGGGTCCGCTAGTAACATGGCTAGTCAGTCTGTTAACACCGTTTATGTTCAGGATTGGTATAATATCACTCCGACTAAAGTTATTTGGTATGTACTGAATCTACGTTACTCAAATGGTAATATAAGTGTTTCTGGAACCCCATTTACTGGCTCTGATATTCTTATATCTCCTTCAAACTTTACTATTAAAGGAGTTAGTCTCCCTAACACTGGATATAAGTTCATTAACCAGAATGCTTTTGGGAACTTGGGTTATCGTCCCGACATGGAGTATGTAGGTAATAATGCCGCGTATACTGGAGTTTTTGGCGATACAACCGCCAGATGTGAGTTCATTGGGTCTAATAATGGTAGTCTATGGTCCCCTGTAAACTATGGTGGTGCTGCCTCCCAGATTAGTATCTACAAATTTAACGCAGGTAAGCAGTGGTACGTAGATACTAACACTAACTCTATTGGTAATGAACATGGGGCTGTGTGGAGTCCAAGTACAGTTCCTCTCCGATTATTTCCAAATAACGTGGCTAGTACGTATGTTGGAGATGATATTACTCCTTCATACCCCGGTACTGGAGATTACTATCTTCCTCTATCAACTGTTTGGTTAGGGTTACCTAATGCCCATTCTACTATCATCCTAACTAGCGAAGTTATCATGGGTAACATTAATACTGCCGGACAACCAATTCGTACGTATGCAGGTAGTGCGTGGCAGGTACAGGGTAGACGTCAGCAGAGTTATACTGCAGGTGACGGAGTATTCCATCAAATATTGACTTTACCACCCGGACATCTAGTACCCTATCATGGGACTTCTTCTTATAGCTATTGGCAAGTATGGGCTAGTAGTCCAGAAATGGAATTTCGTAGGAATGGATATATCTATACAGTAAAGAACCTTGGTAATGGTAACGTTGAGTTTGGTGTTATTATACATGCTGGATCTCAGGCAGCTGTTTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b1192d871cd2be0f6bf779c615258b287852f2df451c2c53dc0c917985f34a14
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2277
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples Pacifico,C., Hilbert,M., Sofka,D., Dinhopl,N., Pap,I.-J., Aspoeck,C., Carrico,J.A. and Hilbert,F. 2019 — GenBank