Protein

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Genbank accession
XYE77983.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,63
Protein sequence
MNFSFTRDTGDGVKSVFTMSFAGQDEGYLDASNIHVYVNGVDVPFTIHPTDPNKVYLSTAPANGADVLIRRIMPKNVPYSDFRNGNPFSQDTLNYTQLQQLYVTQELLDGFLPDGFYFKQDVNMGGYNIKNLGDAVDPDDAVKKDVTDNLDNRVSSLEDGLTDTAITTVPWRFIATGGELTISPPYVFTNALLYINGVTQTLGANYAYTVSGNKLHLAEPLISGDEVFVIIGTNVQPPSDVISYDGAMLLYASLVTGVPIQQVYIPVIGLTVTNALVFIDNGVIHTLSAPATGVITSIAWPSITIS
Physico‐chemical
properties
protein length:306 AA
molecular weight: 33134,89600 Da
isoelectric point:4,27545
aromaticity:0,10131
hydropathy:0,07484

Domains

Domains [InterPro]
DC_0041
STR
1–303
DC_0041
IPR005604
ATT
5–110
IPR005604
XYE77983.1
1 306
Architecture
ATT
STR
ATT 1-110 | STR 111-303 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYE77983.1
1 306
Domain Start End Length (AA) Confidence
N-terminal 1 305 305 0,9914
Central domain 306 305 1 0,4751
C-terminal 306 306 0 0,0000
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-305
Central
306-305
C-terminal
306-306

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF38
[NCBI] 		3424006 Viruses > unclassified bacterial viruses >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYE77983.1 [NCBI]
Genbank nucleotide accession
PV648004.1 [NCBI]
CDS location
range 3507 -> 4427
strand +
CDS
ATGAACTTCTCTTTTACTCGTGATACAGGTGACGGAGTTAAGTCAGTATTCACAATGTCCTTTGCAGGGCAAGATGAGGGCTATTTGGATGCCTCTAATATCCATGTGTACGTTAATGGTGTTGATGTTCCATTCACCATTCACCCAACTGACCCTAACAAAGTCTACTTATCTACTGCCCCAGCTAATGGGGCTGATGTACTTATTAGACGTATAATGCCTAAGAATGTACCTTATTCTGATTTTAGGAATGGCAACCCGTTTAGTCAGGACACATTAAACTATACACAGCTACAGCAGCTGTATGTAACCCAAGAGCTTCTCGATGGCTTCCTTCCTGATGGGTTTTACTTTAAGCAAGATGTAAACATGGGAGGCTACAACATTAAGAATCTTGGTGATGCGGTTGACCCTGATGATGCAGTAAAGAAAGATGTAACTGATAATCTTGATAACAGGGTAAGCTCTCTTGAGGATGGTCTGACAGATACTGCAATTACTACAGTACCTTGGCGATTCATTGCAACTGGTGGAGAGCTTACTATATCACCACCATATGTGTTTACTAATGCCCTCTTGTACATTAATGGTGTAACACAGACGCTGGGCGCAAACTACGCTTATACTGTATCGGGTAACAAACTTCACCTAGCGGAACCACTCATTAGCGGTGATGAAGTTTTTGTTATTATTGGGACTAATGTTCAACCACCTTCAGATGTTATCTCTTATGATGGTGCAATGTTGCTATACGCAAGCTTGGTTACTGGTGTCCCTATTCAACAGGTATATATCCCTGTTATTGGGCTTACAGTAACTAATGCTCTTGTTTTTATTGATAATGGTGTGATACATACCCTCAGCGCCCCAGCTACTGGTGTAATAACCTCTATAGCTTGGCCTAGCATCACCATTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b10741ace8902b9d1a14bfcd61e047f58200633d27bcd845de5f2624ad278e39
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8972
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50