Protein

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Genbank accession
YP_009835862.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAVVASNQSKPQQGKATANVEQKVSTAQNASSEVQYTLFASGLNNGGRNVELKNKNYTDNIAILFDVVEDHTYTRTVDKTSYAVENKVKYSDHGVIEDGKFSFSARINSSPLYMIENNYIDKDTDPNNPVESRRPEKALEVLERLITDRQIVTLVTEDRIIENYILTSLEASRSNSDGAALVFQLEFTEFRTFTLGKTALATVYTDPKKSGGKTKQKGAVQSSATDDEVEVTARRTKFAGPNQDGWQKVANDMGIGDYTKQDQVVGTLTPDGKLKDLNGNTLDYNKAVGN
Physico‐chemical
properties
protein length:290 AA
molecular weight: 31970,01790 Da
isoelectric point:5,30657
aromaticity:0,07241
hydropathy:-0,64966

Domains

Domains [InterPro]
DC_0712
ATT
2–50
DC_0712 IPR048494
DC_1100
STR
76–280
DC_1100
YP_009835862.1
1 290
Architecture
ATT
ATT
STR
ATT 2-50 | ATT 65-199 | STR 200-280 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage Ro1
[NCBI] 		2053702 Uroviricota > Caudoviricetes > Vequintavirinae > Mydovirus Ro1 >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009835862.1 [NCBI]
Genbank nucleotide accession
NC_048682.1 [NCBI]
CDS location
range 104353 -> 105225
strand +
CDS
ATGGCAGTTGTAGCAAGCAACCAGTCCAAACCGCAACAAGGTAAGGCTACAGCAAACGTTGAGCAAAAAGTCTCTACGGCTCAGAATGCCAGTAGTGAAGTTCAATATACTTTATTTGCAAGCGGCCTTAACAATGGCGGAAGGAATGTAGAATTAAAAAATAAAAACTATACGGACAATATTGCGATTTTATTTGATGTCGTTGAAGACCATACGTATACAAGAACTGTTGACAAAACCTCCTACGCAGTAGAGAATAAGGTCAAATACAGTGATCATGGTGTGATAGAGGATGGTAAATTCTCTTTCAGTGCGAGAATCAATAGCTCGCCACTCTACATGATTGAGAACAACTACATCGACAAAGACACCGATCCTAACAACCCGGTAGAATCCCGACGCCCAGAAAAGGCCTTGGAGGTTTTGGAAAGGCTCATCACTGATCGCCAAATCGTTACGCTTGTAACGGAAGACCGCATCATTGAAAACTATATCTTGACTTCTTTGGAAGCAAGCCGCAGCAATTCAGATGGGGCAGCGCTGGTTTTTCAACTTGAGTTTACTGAGTTCCGTACTTTTACTCTTGGGAAGACAGCCTTGGCTACGGTGTATACAGACCCTAAAAAGTCAGGCGGAAAAACAAAACAGAAAGGCGCTGTTCAGTCTTCCGCCACTGACGATGAAGTAGAAGTCACCGCAAGGAGAACCAAGTTTGCCGGACCTAACCAAGATGGTTGGCAAAAGGTTGCAAACGATATGGGCATTGGGGATTATACCAAGCAAGACCAAGTGGTTGGAACACTGACGCCGGACGGTAAACTCAAGGATCTGAATGGAAATACCCTCGACTATAATAAAGCGGTAGGTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
52c1b1eb143215244ca11f253f5a0382a70212d0cdd6000d7f06f0e878303902
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6396
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparation Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank