Protein

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Genbank accession
YP_010683839.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTIIKRADLGRPLTWDELDDNFQQVDDLTAAASAAVSSAAASATTAAGSATNSLNSANSAASSADDAAASATVAINALMNSTFEPADFDFTSGGTLDSTDRNKAVYNPADNNWYSWSGTLPKIVSAGEDPTIDGNWRPRTDQILRQNLSSNDGFKLLGMCETVAELRTVEPSYPGQVIKLRRAVSGGPVLNAEMFYDDSDTSSSDNDFSVFVTPGGARWKPCFTDGINAWMAGFSESENNLAECINKIGQWYVDQSISDVQINNRKAVIYVPGLGYKTTYTMTSTVKLPPSLAELRPMCDMVFDYSASPGLDGIVCSHEYSGLTSGKGNSQNGDSADAGGAVINPIGVLYLKGPGITKSKDESGNVTSSTSSTGVGLVLGNRTRISAGAGYLNVRDAHARNVRIFGFMGGFQFGNYDTYLVTLSESNLYSNLHNHYQPNVTVANTGEGMYFDRVTLSNAGINNHYIDANGLDYWFKNTHIDYAYQDGVFFGPNAITEMVLTDCWVEGNDRYVFAQPTKTGTSGQCRILMQGGKIVPNRYGVTYRGVRPIFKSTVFNTFILELMDVDLNGGPAGYMCDDAYGTWVPYGDQTAIIARYRVSDTYKWLTRFVYGPGGYLLNSNFTFTGSAGATLPSSVSTADAASAYHWYAVTGGATVVFGDAADADSDGLIPVKITATNTSDIVYLFCANYVQFPRNGAYMKCKGSVKCAAAAGSVNVQAALRPLTYRSVVSTLNTSTNVITNTYNEVSLGTVTGDTIDVLGDILTKTYLTRTSNDYVSTPPLKIQNYFRGSLWGNPGLKFTGFTGTIYVKLPAYWFEGVHPNW
Physico‐chemical
properties
protein length:822 AA
molecular weight: 88537,47890 Da
isoelectric point:4,96832
aromaticity:0,11071
hydropathy:-0,18929

Domains

Domains [InterPro]
DC_1348
ATT
1–296
DC_1348
G3DSA:2.10.10.80
ATT
83–151
G3DSA:2.10.10.80 DC_0903
YP_010683839.1
1 822
Architecture
ATT
STR
ATT 1-296 | STR 297-820 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010683839.1
1 822
Domain Start End Length (AA) Confidence
N-terminal 1 239 239 0,9948
Central domain 240 615 377 0,9902
C-terminal 616 822 206 0,9906
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-239
Central
240-615
C-terminal
616-822

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage VLCpiM12a
[NCBI] 		2874879 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010683839.1 [NCBI]
Genbank nucleotide accession
NC_071131.1 [NCBI]
CDS location
range 17974 -> 20442
strand -
CDS
ATGACCATTATCAAACGCGCAGACCTGGGTCGGCCCTTAACGTGGGACGAACTGGATGATAACTTCCAGCAGGTTGATGATTTGACAGCAGCAGCATCAGCGGCTGTATCAAGTGCTGCTGCTTCAGCTACAACCGCTGCAGGCAGTGCTACGAATTCACTTAATAGTGCAAATAGTGCTGCTAGTTCGGCCGATGACGCCGCAGCCTCAGCCACTGTGGCGATAAATGCGTTGATGAATTCAACATTTGAGCCCGCTGATTTCGATTTTACCAGTGGTGGGACGCTCGATAGTACCGACCGCAATAAAGCAGTGTACAACCCGGCGGACAATAACTGGTATTCATGGTCGGGCACTCTGCCAAAAATTGTATCGGCGGGGGAAGACCCTACTATTGATGGTAATTGGCGTCCGAGAACGGACCAGATATTACGGCAAAATCTAAGTTCTAACGATGGATTTAAGTTGCTGGGCATGTGCGAGACCGTGGCCGAATTACGAACGGTGGAGCCTTCATATCCTGGTCAAGTGATAAAACTTCGACGCGCGGTATCTGGAGGGCCTGTTCTAAACGCCGAAATGTTCTACGATGATAGTGACACTTCGTCATCCGATAACGATTTTTCAGTTTTCGTAACCCCTGGTGGAGCCCGCTGGAAGCCTTGTTTTACGGATGGCATAAATGCCTGGATGGCTGGATTTTCAGAATCCGAGAATAATTTGGCTGAATGTATAAATAAAATAGGACAGTGGTACGTAGACCAATCTATTTCGGATGTACAGATTAATAACCGCAAGGCTGTCATCTATGTTCCGGGGCTAGGATATAAGACAACTTATACCATGACCTCTACAGTCAAGCTGCCGCCGTCACTCGCAGAATTGCGCCCTATGTGTGATATGGTATTTGACTACAGCGCATCTCCTGGTTTAGACGGAATCGTTTGTAGCCATGAGTATAGCGGGTTAACTTCGGGCAAAGGGAACAGCCAAAATGGTGATAGCGCAGATGCCGGGGGAGCAGTCATAAACCCTATTGGCGTACTTTACCTGAAAGGACCTGGAATAACCAAGAGTAAAGACGAATCAGGAAATGTGACTTCTTCAACATCATCCACCGGAGTTGGATTGGTGTTAGGAAACAGAACGCGAATTTCTGCTGGCGCGGGGTATCTTAACGTAAGGGATGCTCATGCCAGAAACGTTAGAATATTTGGGTTTATGGGCGGATTCCAGTTCGGCAACTATGACACGTATCTGGTTACTTTATCCGAATCAAATTTATATTCTAACCTTCACAACCACTATCAACCTAATGTCACTGTGGCAAACACTGGTGAAGGTATGTATTTTGACCGCGTTACATTGTCTAACGCCGGGATAAACAATCACTATATAGACGCCAATGGACTGGATTATTGGTTTAAAAATACTCATATCGACTATGCCTACCAGGATGGAGTATTTTTCGGCCCAAATGCTATTACTGAGATGGTTTTAACCGATTGCTGGGTGGAAGGTAATGACCGTTATGTTTTCGCGCAGCCCACAAAAACAGGAACGTCCGGGCAGTGTCGCATTCTGATGCAGGGCGGCAAGATAGTGCCAAATCGCTACGGAGTAACCTATCGAGGTGTCAGGCCTATTTTCAAATCCACTGTGTTCAATACTTTCATCTTGGAACTGATGGACGTGGACCTCAATGGTGGTCCTGCCGGTTATATGTGTGATGACGCCTATGGCACTTGGGTGCCATACGGTGACCAGACCGCAATTATCGCTCGATATCGGGTCTCTGATACGTATAAATGGTTAACGCGTTTCGTATATGGCCCAGGTGGGTATTTACTAAACTCTAACTTCACTTTCACCGGGAGTGCAGGCGCTACACTACCATCATCCGTATCTACAGCTGATGCGGCGAGTGCGTACCATTGGTATGCGGTTACTGGAGGCGCTACGGTTGTGTTTGGGGACGCGGCGGACGCAGACAGCGATGGACTAATCCCTGTAAAAATAACGGCAACGAATACCAGCGACATCGTGTATCTGTTCTGCGCCAATTATGTGCAGTTCCCCAGAAACGGCGCCTATATGAAATGTAAGGGGTCGGTTAAGTGCGCTGCCGCCGCAGGGTCTGTAAACGTGCAGGCTGCGTTGCGCCCTCTGACGTATAGGTCGGTCGTGTCAACCCTTAACACCTCAACTAACGTTATAACTAATACTTATAATGAGGTCTCATTGGGTACTGTCACCGGAGACACCATCGACGTATTGGGTGACATTCTGACAAAAACGTATTTAACAAGGACCTCAAATGATTACGTAAGCACACCCCCCTTAAAGATTCAGAATTATTTTAGGGGGAGCTTATGGGGGAATCCTGGGTTAAAATTCACCGGGTTCACCGGGACTATTTATGTTAAGCTTCCTGCCTACTGGTTCGAAGGCGTACATCCTAACTGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e3ebdd114fad713dfad7321b3df31545ff8803cdb0a79a08a84927f3a055c0da
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7258
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genetic determinants of host tropism in Klebsiella phages Beamud,B., Garcia-Gonzalez,N., Gomez-Ortega,M., Gonzalez-Candelas,F., Domingo-Calap,P. and Sanjuan,R. — — GenBank