Protein

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Genbank accession
YP_009799785.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MIKNMITGSKGGSSKPHTPVEMEDNLISINRIRILLAVSDGEVDPDFSLKDLYFDDVPVMNQDGSLNFQNVKAEFRPGTQTQDYIQGFTDTASEITVARDLTAATPYIISVTNKNLSAIRIKILMPRGVTQEDNGDLTGVRVEYAVDMAVDGAEYKEVLHDVIEGKTMSGYDRSRRIDLPAFNDRVLLRVRRLTDSTSARVTDLIKMQSYAEVVDAKFRYPLTGLVYVEFDSELFPNALPNISIKKKWKIINVPSNYDPISRTYSGSWDGTWKKAWSNNPAFVLYDLITNQRYGLDQRELGIALDKWSIYECAQYCDQMVPDGKGGTEPRYLCDVVIQSQVEAYQLVRDICSIFRGMSFWNGESLSIVIDKPRDASYIFTNDNVVNGEFTYTFASEKSMYTQCNVTFDDEQNMYQQDVEGVFETEAALRFGYNSTSITAIGCTRRSEANRRGRWILKTNVKSTTVNFATGLEGMIPTVGDVIVVSDNFWSSALTLNLSGRVMEVSGLQVFTPFKVDARAGDRILVNKPDGKPVGRTIARVSDDGKTLTLNTTFGFDVQPDTIFAIERTDIAQQRYVVTGITKGDGDEEFTYNITAVEYDPNKYDEIDYGVNIDDRPTSIVQPDILPAPQNVKIESYSRVVQGASVETMHVSWDKVEYASLYEMQWRKDNGNWNNTPRTANKETEVEGIYAGNYHVRVRSVAANGSASGWSAIVSAGLTGKVGEPERPINLTASDNEVFGIRVKWGMPEGSGDTAYIELHQAPNGADGHPIVDEATLLTLIPFPQYEYWHSILPAGHVVWYKARAVDKIGNVSDWTDFVRGMASDDTSIITDHIKVDIENSDGYKWLQENAIKANDKIHSTAESVIENALANDKDVRRMRVENGKRKAEFLQSLKLIADETEARVTQVTQMSAQFDEKLTAQNSELREVIANSTETISQRIDQLTATFESEIDGVKQDIKAQITDVNQAITNEAEARASADRALSTQIGDTQSAVNQKLDSWVNGTSVGAMYGVKLGIRYNGQEYSAGMALSLVADGSGVKSQFLFDAGRFAIINNAQSGAFTLPFVVENNQVIINSAVIKDGSITNAKIANFINSNNWQSGVAGWAINKEGYAEFNQVTVRGTVYANAGSFTGNVYATDGWFRGTVYAEKIEGDVAKAVVLGFNGSVHIPAVNYNRHLVIPYVGLHGWTYSGGYGQGGGTVWVDSSYGGRIANVSSTAMHGGGSAYIMLPAGNATTLSYGGSLDHANAVPVLTVLLFKV
Physico‐chemical
properties
protein length:1259 AA
molecular weight: 138805,62110 Da
isoelectric point:4,97031
aromaticity:0,09293
hydropathy:-0,29500

Domains

Domains [InterPro]
DC_0014
STR
1–1241
DC_0014
IPR053171
Unmapped
3–875
IPR053171 IPR015406
IPR055385
ATT
92–216
IPR055385 IPR032876 IPR036116
IPR013783
STR
626–719
IPR013783
IPR003961
STR
626–715
IPR003961
YP_009799785.1
1 1259
Architecture
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-216 | STR 217-338 | ATT 339-494 | STR 495-1241 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009799785.1
1 1259
Domain Start End Length (AA) Confidence
N-terminal 1 500 500 0,8281
Central domain 501 1025 526 0,0938
C-terminal 1026 1259 233 0,3934
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-500
Central
501-1025
C-terminal
1026-1259

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_PHB07
[NCBI] 		2136179 Uroviricota > Caudoviricetes > Drexlerviridae > Tlsvirus > Tlsvirus PHB07
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009799785.1 [NCBI]
Genbank nucleotide accession
NC_047947 [NCBI]
CDS location
range 19960 -> 23739
strand -
CDS
ATGATCAAAAATATGATAACTGGCAGTAAGGGCGGTTCTTCAAAGCCTCATACACCTGTTGAAATGGAAGATAACCTAATTTCAATTAACAGGATCAGAATTCTTTTAGCCGTTTCTGATGGTGAAGTTGATCCAGACTTTTCATTGAAAGATTTATATTTTGATGACGTTCCGGTTATGAATCAGGATGGTTCGCTAAACTTTCAGAATGTTAAGGCGGAATTCAGACCAGGGACGCAAACGCAGGATTATATTCAGGGGTTTACTGATACAGCCAGCGAAATTACAGTTGCTCGCGATCTGACAGCCGCAACGCCTTATATTATTTCTGTTACCAATAAAAACCTTTCTGCGATCCGTATTAAAATTTTAATGCCTCGCGGGGTTACTCAGGAAGATAACGGGGATCTAACAGGTGTTCGCGTTGAATATGCTGTTGATATGGCTGTTGATGGTGCTGAATATAAAGAGGTTTTGCATGATGTAATTGAAGGTAAAACAATGAGCGGTTACGACAGAAGTCGCCGAATTGATTTACCTGCTTTCAATGATCGTGTTTTATTGCGCGTCCGTCGCCTTACAGATAGCACGTCAGCAAGGGTAACGGATCTGATTAAAATGCAAAGCTATGCGGAAGTTGTAGACGCTAAATTTCGTTACCCCCTGACTGGTTTAGTATATGTTGAGTTTGACAGCGAATTATTCCCTAATGCGTTGCCGAATATCAGCATTAAGAAAAAATGGAAAATCATTAATGTTCCGTCAAATTATGATCCTATTTCACGCACTTACTCAGGGTCATGGGATGGAACCTGGAAAAAGGCATGGAGTAATAACCCTGCTTTTGTTCTGTATGATTTGATTACCAATCAGCGTTACGGACTCGATCAAAGAGAGTTAGGCATCGCGCTTGATAAATGGAGTATTTACGAATGTGCGCAGTATTGCGATCAGATGGTTCCAGACGGTAAAGGCGGAACAGAGCCGCGCTATCTTTGCGACGTTGTGATCCAGAGCCAGGTAGAAGCGTATCAGCTTGTGCGTGATATTTGTTCAATCTTCCGTGGCATGAGCTTTTGGAATGGTGAGAGCCTTTCAATCGTGATCGATAAGCCTCGCGATGCGTCATACATCTTTACTAATGACAACGTGGTTAACGGTGAATTCACTTACACGTTTGCCAGCGAAAAAAGCATGTACACGCAATGCAACGTGACTTTCGACGACGAACAAAACATGTATCAACAGGATGTTGAGGGAGTTTTCGAAACGGAGGCGGCGTTACGCTTTGGATATAACAGCACGTCAATTACTGCGATTGGATGCACACGACGCAGCGAAGCCAACCGCCGTGGACGCTGGATTTTAAAAACCAACGTCAAGAGCACAACGGTAAACTTTGCTACAGGTCTGGAAGGTATGATCCCAACCGTAGGCGATGTAATTGTTGTATCTGATAACTTTTGGTCAAGTGCTCTAACGCTGAATCTATCAGGTCGCGTGATGGAGGTTAGCGGGTTGCAGGTGTTCACACCGTTTAAGGTAGACGCAAGAGCAGGTGATCGCATTCTGGTAAATAAGCCGGATGGTAAGCCAGTTGGTCGAACCATTGCGCGTGTAAGTGATGACGGTAAAACGCTGACGCTAAACACGACATTTGGTTTTGACGTTCAGCCGGATACCATTTTTGCAATTGAGCGAACCGATATTGCACAGCAAAGATATGTTGTAACAGGAATCACTAAGGGTGACGGTGATGAAGAATTTACCTACAACATAACGGCTGTTGAATACGATCCGAACAAATACGATGAAATTGATTACGGCGTAAACATTGATGACCGTCCGACTTCAATCGTGCAGCCTGACATTTTGCCAGCGCCGCAAAACGTCAAGATAGAATCTTATTCGCGAGTTGTCCAGGGCGCGAGCGTGGAAACAATGCACGTTTCATGGGATAAGGTTGAATATGCAAGCCTTTATGAAATGCAGTGGAGAAAAGACAATGGTAACTGGAACAACACGCCGCGCACAGCCAACAAGGAAACGGAAGTTGAAGGAATTTATGCGGGTAACTATCACGTAAGGGTTAGATCTGTTGCAGCAAATGGTTCAGCGTCTGGATGGTCAGCCATTGTAAGCGCCGGATTAACTGGCAAGGTTGGCGAACCTGAAAGGCCGATTAACCTTACTGCGTCTGACAATGAAGTTTTCGGAATTCGCGTAAAATGGGGTATGCCAGAAGGAAGCGGAGACACTGCATATATTGAGTTGCATCAAGCGCCGAACGGTGCTGATGGTCATCCTATAGTTGATGAAGCAACGCTCTTAACGCTGATACCGTTCCCGCAATATGAGTATTGGCATTCAATACTGCCAGCGGGTCATGTTGTCTGGTACAAGGCAAGGGCAGTTGACAAAATCGGAAACGTTTCTGATTGGACTGATTTTGTGCGCGGCATGGCTTCCGACGATACAAGCATTATCACGGATCATATTAAGGTCGATATTGAAAATTCTGATGGCTATAAGTGGTTGCAGGAAAACGCAATAAAGGCAAATGATAAGATCCACAGCACAGCGGAATCAGTGATTGAAAACGCATTAGCGAATGATAAAGATGTGCGACGTATGCGAGTTGAAAACGGCAAGCGCAAAGCGGAGTTCTTGCAATCATTGAAACTCATTGCAGACGAAACAGAAGCCAGGGTAACGCAGGTCACTCAAATGAGTGCGCAATTTGACGAGAAATTAACGGCTCAAAATAGCGAATTGAGAGAGGTAATTGCTAACAGCACTGAAACCATTAGCCAAAGGATTGATCAGCTTACAGCTACGTTTGAGAGCGAAATTGATGGGGTTAAGCAGGATATCAAAGCACAGATAACTGATGTTAACCAGGCAATCACCAATGAAGCGGAAGCGCGAGCGTCAGCAGATAGGGCGTTATCAACTCAAATTGGTGATACCCAATCAGCGGTCAACCAGAAACTTGATTCATGGGTTAACGGTACAAGCGTTGGCGCGATGTACGGCGTTAAGTTGGGGATCAGGTACAACGGGCAGGAATATAGCGCAGGTATGGCGCTTTCTCTTGTCGCTGATGGTAGCGGAGTTAAATCACAATTCCTGTTTGATGCTGGAAGATTTGCGATCATCAACAATGCTCAAAGCGGAGCCTTTACGTTGCCGTTTGTTGTTGAAAATAATCAGGTGATTATCAATAGCGCAGTGATTAAAGATGGATCAATCACAAACGCAAAAATCGCCAACTTTATCAACTCTAACAACTGGCAGAGCGGGGTTGCAGGATGGGCTATTAACAAAGAGGGTTACGCTGAATTTAACCAGGTAACGGTAAGGGGTACGGTGTACGCAAACGCCGGATCATTCACAGGTAACGTTTATGCTACTGATGGATGGTTTAGGGGTACTGTTTACGCTGAAAAAATTGAGGGTGACGTTGCAAAGGCTGTTGTTCTTGGGTTTAACGGATCGGTTCACATTCCGGCTGTTAACTACAACAGACACCTTGTTATTCCTTACGTTGGTTTGCATGGTTGGACGTATTCAGGCGGATACGGGCAGGGCGGCGGTACTGTTTGGGTAGATTCATCATATGGCGGTCGAATTGCTAACGTTAGTTCAACTGCGATGCATGGCGGCGGTAGTGCTTACATTATGTTGCCAGCAGGTAATGCAACCACGCTTTCTTATGGTGGAAGTCTTGACCACGCTAACGCGGTTCCAGTTTTAACGGTTCTGTTATTCAAAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2efe3fbcbd75f896f5d09d03d038ab19f144535508daa2cd1b7a2f6069a2dafe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7506
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Three Siphoviridae Salmonella enterica serovar enteritidis bacteriophage show promising potential for phage therapy Chen,Y., Sun,E., Yang,L. and Wu,B. 2018-11 — GenBank