Protein

View in Explore
Genbank accession
AZF90954.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MKIITRNDITLTNVNDGADGKTPYFHTAWAYSADGKDRFTTTYPNLNLLDDTATFDKMIYNSSNNSVSSITKTVVSGITNTVMDVKTSGNAYAVGLYRPNSYSITVGQTLTISFMARADNDTNVWVGFENFPNGRKTFTITPNWKRYTYTFTATTSGSPNFIIYGWDMAAGKHFQVYNPKVEEGSIATPWMPSASEVTTDDFPKYIGQYTNYNQVDSPNPQDYTWSLIRGNDGKQGPQGERGPQGLQGPKGDQGIPGPKGADGRTQYTHIAYADTVSGSGFSQTDVNKPYIGMYQDFNAIDSQNPQDYRWTKWKGSDGKDGIPGKAGADGRTPYVHFAYADSADGRNGFSLTQTGRKRYLGVLTNYFKEDSTNPEEYTWNDTAGSISVGARNLLKGSKGPFKPDRKPTNFDNYVYYENETSVYLEQNKKYIISAKTDGNFSDSHNPYADSDNVVLMLFGDGILQIISDSNTGTTGTQFTWTHPTGTYHLRVNTYHKTATKSVWEVKIEDGNIKTDWTPAIEDIQEEIDTKADAAMTQAQLNRLNEEDSILKAEIAARAKADIVNNWIKDYNDFLEVSERERVKAEQDLKNAQQRLNAINKDLKEMTERWNFIDTYMSASNEGFVIGKQDGSKSIMLNADGGITFFSAGRSTMTISEGKTEMNNGVVKKSLKVGRYIEQPYHIDPDINVIRYVGEE
Physico‐chemical
properties
protein length:695 AA
molecular weight: 77568,61030 Da
isoelectric point:5,32362
aromaticity:0,11223
hydropathy:-0,72331

Domains

Domains [InterPro]
DC_1398
STR
3–228
DC_1398 G3DSA:1.20.5.320 DC_0002
IPR008979
STR
39–160
IPR008979 DC_1328 Coil
G3DSA:2.60.120.260
STR
39–177
G3DSA:2.60.120.260
AZF90954.1
1 695
Architecture
STR
STR 3-695
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage CHPC929
[NCBI] 		2365050 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus thermophilus
[NCBI] 		1308 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF90954.1 [NCBI]
Genbank nucleotide accession
MH937473 [NCBI]
CDS location
range 19642 -> 21729
strand +
CDS
ATGAAGATAATAACACGAAATGATATAACCCTAACCAACGTTAATGATGGAGCTGACGGTAAAACACCTTATTTCCATACGGCATGGGCTTACAGTGCTGATGGCAAGGATAGATTCACTACCACTTATCCTAATTTGAACTTGCTAGATGATACTGCTACATTTGATAAAATGATTTATAATTCTTCTAATAATTCAGTTAGTTCCATTACAAAAACTGTGGTATCAGGAATTACTAATACAGTCATGGATGTTAAAACAAGCGGTAACGCTTATGCCGTTGGTTTGTATAGACCAAACAGTTATAGCATAACAGTTGGTCAAACCTTGACCATATCATTTATGGCAAGAGCGGACAACGATACGAATGTTTGGGTTGGTTTTGAGAACTTCCCGAACGGACGAAAAACTTTCACAATAACACCTAATTGGAAACGATACACTTACACATTCACAGCGACAACTTCAGGATCTCCAAATTTTATTATATACGGTTGGGATATGGCTGCAGGTAAACACTTTCAAGTTTACAACCCTAAAGTGGAAGAAGGTTCTATCGCCACTCCTTGGATGCCTAGTGCTTCCGAAGTAACAACCGACGACTTTCCAAAATACATTGGTCAGTACACAAACTATAATCAAGTAGATAGTCCTAATCCTCAAGATTATACTTGGAGCCTGATTCGAGGTAACGATGGTAAACAAGGTCCTCAAGGTGAACGCGGTCCTCAAGGTTTACAAGGACCTAAAGGAGACCAAGGTATACCGGGACCAAAGGGTGCTGACGGAAGAACACAGTACACCCATATAGCTTATGCCGACACTGTTTCTGGTAGTGGATTTAGTCAAACAGATGTCAATAAACCATACATCGGAATGTATCAAGACTTCAATGCTATTGACAGTCAAAACCCACAAGATTATCGTTGGACAAAGTGGAAGGGCAGCGATGGTAAAGACGGGATTCCAGGTAAGGCTGGAGCAGACGGACGAACACCTTATGTTCATTTCGCTTATGCTGATAGTGCCGATGGTCGAAACGGTTTCAGTCTTACCCAGACTGGACGTAAGCGTTACCTAGGTGTACTTACCAACTACTTCAAAGAAGACAGCACAAACCCAGAAGAATATACATGGAATGATACTGCTGGTAGTATTTCAGTTGGTGCTAGGAACCTCTTGAAGGGTTCGAAAGGACCTTTTAAACCTGATCGTAAACCGACAAATTTTGATAATTACGTTTATTATGAAAATGAAACTTCTGTATATTTAGAGCAAAACAAAAAGTACATCATTAGTGCTAAAACAGATGGTAATTTTTCTGATTCTCATAACCCATACGCTGATAGCGACAATGTTGTACTCATGTTATTTGGCGACGGTATTCTTCAGATTATATCTGATTCAAATACAGGGACAACAGGAACGCAGTTTACATGGACCCATCCAACAGGCACATATCATCTACGTGTCAATACATATCACAAAACAGCAACAAAATCTGTTTGGGAAGTGAAGATCGAAGATGGTAATATCAAAACTGACTGGACTCCTGCCATCGAGGATATACAAGAAGAGATTGACACTAAAGCTGATGCTGCTATGACACAAGCACAGCTCAACAGACTTAACGAAGAGGATAGCATCCTCAAAGCTGAGATTGCTGCTAGAGCTAAAGCTGATATCGTCAACAATTGGATTAAAGATTACAACGATTTTCTTGAAGTAAGTGAAAGAGAACGTGTTAAAGCAGAGCAAGATTTGAAAAATGCTCAACAGCGCTTGAATGCCATCAATAAAGACCTTAAAGAAATGACGGAACGTTGGAACTTCATTGACACATACATGAGTGCTTCTAACGAAGGGTTCGTAATAGGCAAACAAGATGGTAGCAAGAGCATTATGCTTAATGCTGATGGTGGTATTACATTTTTTAGTGCAGGTCGTTCGACAATGACTATTTCTGAAGGTAAAACTGAGATGAATAACGGGGTAGTCAAAAAATCTCTCAAAGTTGGTAGATATATTGAACAACCATATCACATTGACCCAGATATTAATGTTATACGATATGTAGGAGAAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f85a1afabd3a8fcbfd510af790c4bd79c0c97ff3644cdee885f645983545f2e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7500
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A comparative genomics approach for identifying host-range determinants of bacteriophages infecting Streptococcus thermophilus Szymczak,P., Rau,M.H., Monteiro,J.M., de Pinho,M.G., Filipe,S.R., Vogensen,F.K., Zeidan,A. and Janzen,T. 2019-05-29 — GenBank