Protein

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Genbank accession
YP_009597570.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTIIKRADLGRPLTWDELDDNFRQVDDLRAAASAAVSSATASATAAAGSATNSLNSANSASSSAADAAASAASAIDALMNSTFEPSSFDFSTGGTLDTTDRNKAVYNPADNNWYSWVGTLPHVVPPDTDPLSDVNWRPRTDQLLRQNLASSAIPGTSLVTHSDGTRLDNYIEIFNRRTKFIMPEDLPGTDTEQLQSALSYAKSNKVNVVLQAGKTYYVTGSQGLEVDLGYYSFESPNGIAYIDFTGCTAPYCLWVHSSRPYPAGSENHCTSMRGIKAKGAIQNIGQRLLLTGNNNDSSNGTYNGDCKIENCMFSTADIVLGGSNSTWRYKFINCGFMMESTGGTYAMHFPAGLSDSGESITFQNCKIFDMKGCPILVECASFAIGMPGTSVLNTPIKITGNGAMVILDSAANIENPGASAWYRYGEVTGIAARLILNGCTLVCNNPSLQTKPLFYVGENAFIDITLVKTPGNDYPFQNGEEGLRTFVEGDGYVTASHCIGDIRSGAGNIPLHKSLNPTLNPGFESGDLSSWTFNNTGVSTQTCVVGTEYKKTGVYGARMTSSGSSSCFLDQKVKVTQHGYYRTTCQVNTITAGTGTTAGALTVTFYDRAGKSIQSGASSSFTNTPSGWQSVGQFIQGRVPQGAEYCEVSIRCREGAVIDIDNFIINFT
Physico‐chemical
properties
protein length:668 AA
molecular weight: 71320,53710 Da
isoelectric point:5,11957
aromaticity:0,09132
hydropathy:-0,21737

Domains

Domains [InterPro]
DC_0180
ATT
1–90
DC_0180 G3DSA:2.10.10.80 DC_0903
G3DSA:2.10.10.80
ATT
85–151
G3DSA:2.10.10.80 IPR011050 G3DSA:2.60.120.260
YP_009597570.1
1 668
Architecture
ATT
STR
ATT 1-151 | STR 176-666 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009597570.1
1 668
Domain Start End Length (AA) Confidence
N-terminal 1 189 189 0,9889
Central domain 190 513 325 0,9951
C-terminal 514 668 154 0,9918
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-189
Central
190-513
C-terminal
514-668

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnM_KpV52
[NCBI] 		1912321 Uroviricota > Caudoviricetes > Jameshumphriesvirinae > Sircambvirus KpV52 > Jedunavirus KpV80
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009597570.1 [NCBI]
Genbank nucleotide accession
NC_041900 [NCBI]
CDS location
range 25769 -> 27775
strand +
CDS
ATGACCATTATCAAACGTGCAGACCTAGGTCGACCCTTAACGTGGGACGAACTGGATGATAACTTCCGGCAAGTTGATGATTTGAGAGCCGCCGCATCGGCGGCTGTATCGAGTGCAACGGCTTCAGCTACAGCCGCTGCAGGCAGTGCTACGAATTCACTTAATAGTGCAAATAGTGCTTCTAGTTCGGCTGCTGACGCCGCAGCATCGGCAGCATCAGCAATCGATGCGCTAATGAATTCGACATTCGAACCGAGTAGTTTCGACTTCAGCACCGGTGGCACACTTGATACTACAGATCGCAATAAAGCAGTGTACAACCCGGCGGACAATAACTGGTATTCATGGGTGGGTACGTTACCACACGTTGTGCCCCCAGACACAGATCCACTATCCGATGTCAACTGGAGGCCACGTACGGATCAGTTACTGCGACAAAACCTGGCATCGTCCGCGATTCCCGGTACTTCGCTGGTAACCCATTCCGATGGTACTCGGCTTGACAATTATATAGAGATTTTTAACAGAAGAACTAAGTTTATAATGCCGGAGGATTTACCAGGCACTGACACAGAACAGCTCCAGTCGGCGCTATCTTATGCGAAGTCCAACAAAGTCAATGTGGTGTTACAGGCGGGGAAAACCTATTATGTAACTGGGTCGCAAGGTTTGGAAGTAGATTTAGGGTACTATTCTTTCGAGAGCCCCAATGGCATCGCCTATATTGACTTTACAGGTTGTACTGCCCCTTACTGTTTATGGGTTCATTCCAGTCGCCCATATCCTGCTGGGTCAGAGAACCACTGTACATCCATGCGTGGTATAAAAGCCAAAGGTGCGATTCAAAACATTGGTCAGCGGTTGCTGCTAACTGGAAACAATAACGATTCCAGCAACGGCACCTATAATGGCGACTGTAAGATCGAAAACTGCATGTTTTCCACTGCTGATATCGTTTTAGGGGGCTCCAATAGTACCTGGCGTTATAAATTCATCAATTGTGGATTCATGATGGAGTCAACCGGAGGCACATATGCGATGCACTTCCCAGCCGGTCTTTCGGACTCCGGAGAGTCAATTACTTTCCAAAATTGCAAAATATTCGACATGAAAGGATGTCCGATACTTGTGGAATGTGCGAGTTTTGCCATTGGGATGCCTGGTACATCAGTGTTAAATACCCCGATTAAGATAACGGGGAATGGTGCTATGGTCATCTTGGATTCGGCGGCTAATATTGAAAATCCAGGGGCGTCAGCGTGGTATCGCTACGGAGAAGTAACAGGAATTGCGGCGCGACTCATCCTTAATGGGTGTACACTTGTGTGTAATAACCCGTCGCTGCAAACGAAACCGTTATTCTACGTAGGGGAAAATGCCTTCATCGACATCACTCTCGTCAAAACGCCGGGGAATGACTATCCCTTCCAGAACGGGGAAGAAGGGTTGAGAACTTTTGTTGAGGGTGACGGGTATGTTACGGCGAGTCATTGTATCGGCGATATCCGTTCTGGTGCCGGGAATATCCCACTTCATAAATCGCTAAACCCAACATTGAATCCCGGCTTTGAGTCCGGTGATTTATCATCGTGGACATTTAACAACACGGGAGTCAGCACTCAAACGTGCGTAGTAGGTACGGAATACAAGAAAACAGGTGTCTATGGAGCGAGAATGACATCGTCCGGGTCGTCAAGTTGTTTCCTGGACCAAAAAGTAAAAGTAACGCAACATGGTTATTACAGGACCACGTGTCAAGTCAATACCATAACCGCCGGTACAGGGACGACGGCGGGAGCACTAACCGTTACGTTCTACGACAGGGCTGGCAAATCGATCCAATCGGGTGCAAGTAGTTCTTTCACTAATACTCCGAGCGGGTGGCAATCTGTGGGACAATTCATACAAGGTCGAGTACCACAGGGCGCCGAATATTGTGAAGTATCTATCCGCTGCCGTGAAGGCGCGGTGATTGATATCGATAATTTCATCATCAATTTCACATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
0cfac49aa1ec612ba10a0e2f07626498fbf0b313ff3e813d69fcfc4aa2b47d23
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8066
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_KpnM_KpV52 lytic for Klebsiella pneumoniae Komisarova,E.V., Krasilnikova,V.M., Kislichkina,A.A., Myakinina,V.P. and Volozhantsev,N.V. 2017-09-14 — GenBank