Protein

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Genbank accession
YP_009838546.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKNFIDKLDNVKISCCSPRSAYDWDGLTWQELICNVFKGVNECIEFVNTYTEIIREIMKWITNEGLEEEVKKGLDRFIEDGTISEIINGEIFGNIQEKLKELESLIETNQNSIEEIKSDIETLKSEILEEVKKAIKNITERVEKLENAPQPTEIYVLKNAVDYGDCSVIKADDGTFSMIDCMWESNWGALSQQLDKIGVKELKYLFITHYHSDHIGNAPAIINKYKPKFIVYKEGIDFDRLPQVETEWDTKGYFERMIKACKDNGVTEIIANDQELKIGINDTVQLFASHFYDYSNLNAMSVNYMLKSKGVKAVFPGDSAKSTELAIKDKVGKVDWLKLSHHGADGGNSDDWFTSLKPAYGVINRVELYKLDIVKSFALKCIKFGGSVYTNDNNDFCSFRIVDGAIFPTCKEYKFPLQFLDYWDGTYKMTDTTGKIATKGIYPYKSDYYFVKDNGFIAQSQWVNYHGVDYYADSAGRLVRNTFIEGTDNDQPVWYWINEKCEMVLDWTFVNYRNNLYIIKANGMMCDNMTVEYQGDHYRATKGGPLLLNDWFQDGSDWYYFRFDGRMVKNKTMVINGKWYTFGNDGKCTNPDGEPIT
Physico‐chemical
properties
protein length:597 AA
molecular weight: 68800,08770 Da
isoelectric point:4,98065
aromaticity:0,13065
hydropathy:-0,44774

Domains

Domains [InterPro]
DC_0396
ATT
1–187
DC_0396 SSF69360
SSF58100
Unmapped
32–136
SSF58100 IPR036866 G3DSA:2.10.270.10 G3DSA:2.10.270.10
Coil
Unmapped
95–148
Coil IPR036866 IPR018337
IPR036866
STR
160–365
IPR036866 IPR018337
IPR052159
Unmapped
161–363
IPR052159
IPR001279
STR
162–266
IPR001279
YP_009838546.1
1 597
Architecture
ATT
STR
ATT
ATT 1-187 | STR 188-378 | ATT 418-590 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009838546.1
1 597
Domain Start End Length (AA) Confidence
N-terminal 1 188 188 0,8274
Central domain 189 586 399 0,8012
C-terminal 587 597 10 0,1912
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-188
Central
189-586
C-terminal
587-597

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage susfortuna
[NCBI] 		2316154 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009838546.1 [NCBI]
Genbank nucleotide accession
NC_048712 [NCBI]
CDS location
range 2220 -> 4013
strand +
CDS
ATGAAAAATTTCATTGATAAATTAGATAATGTAAAAATTAGTTGTTGTTCTCCTCGTTCAGCTTATGACTGGGATGGTTTAACTTGGCAGGAACTAATATGCAATGTCTTTAAGGGTGTTAATGAATGTATAGAATTTGTTAATACTTATACTGAAATTATTAGGGAAATAATGAAATGGATAACTAATGAAGGCTTAGAGGAAGAAGTAAAAAAAGGTTTAGATAGGTTTATAGAGGATGGAACTATATCCGAGATTATAAACGGAGAAATTTTCGGTAATATACAAGAAAAATTAAAGGAATTAGAGTCTTTAATAGAAACTAATCAAAATAGTATAGAAGAAATTAAGTCAGATATTGAAACTTTAAAATCAGAAATTTTAGAGGAAGTTAAAAAGGCTATAAAGAATATTACTGAAAGAGTTGAAAAGTTAGAAAATGCACCACAACCAACTGAAATATATGTGTTAAAAAATGCTGTTGATTACGGTGATTGTAGTGTTATAAAAGCTGATGATGGAACTTTTTCAATGATAGATTGCATGTGGGAGTCAAACTGGGGGGCTTTATCACAACAATTAGATAAGATAGGAGTTAAAGAATTAAAATATTTGTTTATTACTCATTATCATAGCGACCATATTGGAAACGCTCCTGCAATAATAAATAAATATAAACCTAAATTTATAGTATATAAAGAAGGTATAGATTTTGATAGATTACCGCAGGTTGAAACCGAGTGGGATACTAAAGGTTATTTTGAGAGAATGATTAAAGCTTGTAAAGATAATGGAGTTACTGAAATAATCGCTAACGACCAAGAATTGAAGATTGGTATTAATGATACTGTTCAATTATTTGCATCACATTTTTATGATTATAGCAACTTAAACGCAATGAGTGTAAACTATATGCTTAAATCAAAAGGAGTTAAAGCGGTATTTCCGGGGGATAGTGCTAAGAGTACAGAATTGGCTATAAAAGATAAAGTCGGCAAAGTTGATTGGTTAAAATTATCTCATCATGGTGCAGATGGCGGAAATTCTGATGACTGGTTCACAAGTTTAAAACCAGCTTATGGTGTTATAAATAGAGTTGAATTATACAAGTTAGATATAGTTAAAAGTTTTGCTTTAAAATGTATAAAATTTGGTGGTTCTGTTTATACTAATGATAACAACGACTTTTGTTCTTTTAGAATAGTTGATGGTGCTATATTCCCAACATGTAAAGAATATAAATTCCCTTTACAATTTTTAGATTACTGGGATGGAACTTATAAAATGACAGATACAACAGGTAAGATTGCTACTAAGGGTATTTACCCATATAAATCTGATTACTATTTTGTTAAAGATAATGGATTTATTGCCCAAAGTCAATGGGTAAATTATCATGGTGTAGATTATTATGCAGATTCAGCAGGTAGACTTGTAAGAAATACATTTATAGAAGGAACTGACAACGACCAACCTGTTTGGTATTGGATTAATGAAAAATGTGAAATGGTGTTAGATTGGACTTTTGTTAATTATAGAAATAATTTATATATAATTAAGGCTAATGGTATGATGTGCGATAATATGACAGTTGAATATCAAGGCGACCATTACAGGGCAACAAAAGGCGGTCCGCTTTTACTAAATGATTGGTTTCAAGATGGTTCAGATTGGTATTATTTTAGATTTGACGGAAGAATGGTAAAAAATAAAACTATGGTTATAAACGGAAAATGGTACACATTCGGTAATGATGGTAAGTGTACAAATCCGGATGGTGAACCAATAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cf516da81356ff1bd3ea807ed3f23f1be59dfadeee91d07ea02cb0e3fcb05933
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8202
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel Clostridium perfringens phage susfortuna Kot,W., Ploeger,M., Pedersen,J. and Hansen,L.H. 2020-12-01 — GenBank