Protein

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Genbank accession
YP_007675460.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDGVGGQWVSKRTVYADWAEFDNDARIHPAGTYLIVRGYGHYITTEAGETFETTVGNKVIVQKEGDGAYHTRAFGPPSGTDDTAKIQALLALSSGGKIVFDYFVGSYFVGLLLPGANTHIVLMPGVTLEGISGGSRVFQIQKENIVLEGYGATLKRNPMQTSHVVYINASTSNWARHIRIRGLKIVGNGASGTGGTGENDCIYVGGSPQGVGGNPALDAIPEDVIIEDCECISPRRNVISIVAGDNVTVRNNDLDGTGAVVLQCGVDIEANTYMTDGSSAVKRIKVHDNRLRNCAGINLAVVFGDDVEFFGNDMEITDPTASGIGGGAGGAQFNDNVYREGDRLGATAFDQATGVITVRVSGDTTLHELGIHEGMWVQGSVKLSSGATFPVGMDSPYRYVISWISDDGLQMRVSTGEGYGEITSFSGAETGTLDNDPTVSDLSFLVFREGQCSNIKARDNKINYVGVSGAFDAFNISTCYNWELSNNSVEMGLSTGQQIRATFGYGLTINGGYGRGGIRGLSAGAFSAVSATNHTVKETTLDAYSLTGPFVLSGCKAIACLGDIIDSSNATGALVRKFKAVKGTSSSSFGIKIAAGDRPRIEYSDFSGAGSSAVTSVSLGPSVTNASVVQSKVFGGVIFAAGSKLYNPASLADGEGVSTTVSAPGASFGMPVDVTFPVNLQGVQVTAWVQGSNVIGVRFQNETGAAVDLAEATLSVACR
Physico‐chemical
properties
protein length:719 AA
molecular weight: 75042,85650 Da
isoelectric point:4,98617
aromaticity:0,08067
hydropathy:-0,00890

Domains

Domains [InterPro]
IPR012334
STR
65–381
IPR012334 DC_1409 IPR006626
IPR011050
STR
70–338
IPR011050 IPR006626 IPR006626
IPR011050
STR
76–338
IPR011050
IPR006626
Unmapped
175–206
IPR006626 IPR006626 IPR006626
YP_007675460.1
1 719
Architecture
STR
RBD
STR 65-381 | RBD 382-645 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007675460.1
1 719
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,9836
Central domain 83 635 554 0,9671
C-terminal 636 719 83 0,9890
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-635
C-terminal
636-719

Taxonomy

  Name Taxonomy ID Lineage
Phage Sulfitobacter phage pCB2047-A
[NCBI] 		754045 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sulfitobacter sp. CB2047
[NCBI] 		1525218 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Sulfitobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007675460.1 [NCBI]
Genbank nucleotide accession
NC_020858.2 [NCBI]
CDS location
range 33040 -> 35199
strand -
CDS
GTGGATGGCGTCGGCGGGCAGTGGGTGAGCAAGCGGACGGTGTATGCGGATTGGGCGGAGTTTGACAACGACGCTCGTATTCATCCCGCCGGCACCTATCTAATCGTACGCGGATACGGGCATTACATCACGACCGAAGCGGGCGAGACATTCGAGACGACCGTCGGAAACAAGGTAATTGTTCAGAAAGAAGGCGACGGGGCGTATCACACTCGCGCTTTTGGACCCCCATCTGGGACAGATGACACGGCCAAAATTCAAGCGTTGCTGGCGCTTTCATCTGGTGGGAAAATAGTTTTTGATTACTTCGTTGGCAGCTATTTCGTGGGGCTTCTGCTTCCGGGCGCAAACACGCATATTGTTCTGATGCCTGGGGTAACGCTAGAGGGCATTAGCGGCGGTTCCCGTGTATTCCAGATTCAAAAGGAAAACATTGTTCTTGAGGGATATGGCGCTACGCTTAAACGCAACCCCATGCAAACGTCTCACGTAGTTTATATCAACGCCAGCACGTCAAACTGGGCGCGGCATATCCGGATTCGCGGTCTCAAGATTGTCGGGAATGGTGCGTCAGGAACGGGCGGAACGGGCGAAAACGATTGTATCTATGTAGGCGGTAGCCCCCAAGGGGTCGGCGGGAACCCCGCGCTGGATGCGATCCCAGAAGATGTAATCATTGAGGATTGTGAGTGCATTTCCCCCCGTAGAAACGTTATCTCAATCGTTGCTGGTGATAATGTGACTGTCCGGAACAATGATCTAGACGGTACTGGCGCTGTAGTTCTCCAATGTGGTGTAGATATTGAAGCGAATACCTACATGACTGATGGGTCAAGTGCCGTTAAACGCATCAAGGTCCACGATAACAGGTTGCGGAACTGCGCGGGTATCAACCTCGCTGTAGTATTTGGGGATGATGTCGAGTTTTTTGGTAATGACATGGAGATTACAGACCCGACAGCTTCGGGCATCGGTGGCGGTGCGGGTGGGGCGCAGTTTAACGATAACGTATATCGTGAAGGTGACCGACTGGGTGCTACGGCTTTTGATCAAGCAACAGGGGTAATCACCGTTCGGGTAAGTGGTGACACAACTTTACATGAGTTAGGCATTCACGAAGGTATGTGGGTGCAAGGTTCTGTTAAGTTGAGCAGCGGAGCTACATTCCCTGTAGGGATGGACTCACCATATCGTTACGTTATTTCGTGGATCAGTGACGACGGATTGCAAATGAGGGTATCCACAGGAGAGGGGTACGGGGAGATAACTTCTTTTTCCGGCGCTGAAACAGGGACACTAGACAATGATCCTACTGTCTCTGACTTGAGTTTCCTTGTTTTCCGTGAAGGTCAGTGTAGCAATATCAAGGCCCGAGACAATAAAATAAACTACGTGGGTGTTTCAGGCGCTTTTGACGCTTTCAATATATCAACGTGTTATAATTGGGAGCTTTCAAATAACTCTGTGGAAATGGGTCTTTCTACAGGACAGCAGATCAGAGCGACATTCGGGTATGGCTTAACTATAAATGGTGGATATGGTCGAGGAGGGATACGTGGACTGAGCGCCGGGGCGTTTAGTGCTGTATCAGCTACAAACCATACTGTAAAAGAGACTACTTTGGACGCCTACAGCCTGACCGGACCCTTTGTTCTTTCTGGGTGCAAGGCAATCGCCTGCTTGGGAGATATTATTGATTCTTCAAACGCCACGGGGGCGCTTGTCAGGAAGTTCAAAGCGGTAAAAGGTACATCTTCATCTAGCTTTGGCATTAAGATCGCAGCGGGCGACCGACCAAGGATTGAATACTCTGATTTCTCCGGCGCAGGTTCAAGTGCAGTTACTTCAGTCAGCTTGGGGCCGAGCGTCACAAATGCCAGCGTTGTCCAATCCAAGGTTTTTGGAGGGGTTATATTCGCGGCAGGGTCGAAGCTGTATAATCCCGCTTCGCTTGCCGATGGCGAGGGTGTCAGCACAACTGTCAGCGCACCGGGCGCAAGTTTCGGGATGCCTGTTGATGTGACATTCCCTGTAAACCTTCAGGGTGTACAAGTGACTGCTTGGGTGCAAGGTAGCAACGTGATCGGTGTCCGGTTCCAGAACGAAACAGGTGCAGCCGTCGATCTTGCGGAAGCAACGCTGAGTGTAGCGTGCCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a2f72cf76aaf1b195097aa8ef89f1a46919572ab1b7584c01521ad91e1dbd1a0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8013
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Sulfitobacter phage pCB2047-A Henn,M.R., Buchan,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank