Protein

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Genbank accession
QYC53035.1 [GenBank]
Protein name
tailspike
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSTGCSDVLTLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFATGGTLGINDANKAVLWPIEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFGGKTLTIDCKAKFIGDGMLIWEQLGEGSVVNQPHMQTQTTPYTVYRFDDNGDWVTNPSTVLASVVQRMDKGYKPNINDLDIWGSLPDHIKNQTAGATLRVMSGSNITVNSPEATFGGYVFTLCNRILVKNPRNFIAWESGITFENHHTSAWGYGNWVVGGEIKYGSGCAVLFIRNDGGEDHDGGVRDLISYRVGESGVKTYQNEIGGRSARNYRLVFDNITTIQCYYDGIDINADTGSQVERVDDYPLSQYPWFQLPTEHIIRNIITRDCMGIGAWWDGQRNIIDNVVTYEAHKEGIFDRGTNNDITNVTVIGANKDVVNVNQLTCEGSSRLRGVMIHAYSTQGYAVYAPQSEISAVACAGSGTKKILCTYVSDVQGGNINVQHNENQMTLAMRPAMHGTINPSLLMTADCQVAAPGGEASIVKLSAIQEGVRVGEMQLNRLGFKHMSIPVAPSALPESALEHNSSIGFFFGNDGXLRILIKKPDGTYKTHDLS
Physico‐chemical
properties
protein length:676 AA
molecular weight: 73371,34640 Da
isoelectric point:5,25513
aromaticity:0,08889
hydropathy:-0,24326

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–136
G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
71–132
IPR040775 IPR011050
IPR015331
RBD
138–670
IPR015331
QYC53035.1
1 676
Architecture
ATT
STR
ATT 65-136 | STR 137-675 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYC53035.1
1 676
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9939
Central domain 156 558 404 0,9839
C-terminal 559 676 117 0,9264
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-558
C-terminal
559-676

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SalS_TU03
[NCBI] 		2863279 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC53035.1 [NCBI]
Genbank nucleotide accession
MZ560703 [NCBI]
CDS location
range 23557 -> 25587
strand +
CDS
ATGTCTACTGGTTGCAGCGATGTACTGACACTTAACGATTTACAAATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGTGGTGTAGCCGGCGGTGCAGATATCGACTACGCCACTAACCAGGTAACAGGGCAGACGCAGAAGACGCTGCCGGCGGTCTTACGTGACGCCGGTTTCTCCCCGGCGTCCTTTAACTTCGCAACCGGCGGAACCCTGGGAATTAACGATGCCAATAAAGCTGTTCTTTGGCCTATAGAGGACGGCGGGGATGGGAACTATTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCCGCGGCGTCTACCCCTCTAACAACCGGCGGCATTTCTGATTCGGCTTGGGTAGCTTTTGGGGACATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCTGTTGATAGTGTTCTTATCGACCGCGATTACACTTTCAGCAATAACGAGACCGTTAACTTCGGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATCGGTGACGGCATGCTAATATGGGAACAACTCGGCGAAGGGTCTGTTGTGAATCAACCACATATGCAGACACAAACCACACCGTACACGGTGTATAGATTCGACGACAACGGTGACTGGGTGACTAACCCATCAACGGTGCTGGCGTCGGTAGTCCAAAGGATGGATAAGGGGTATAAGCCCAATATTAACGATTTGGATATCTGGGGTAGCCTTCCTGATCACATAAAAAATCAAACAGCCGGTGCGACCCTCCGCGTTATGAGCGGGTCAAACATAACCGTAAATTCACCGGAAGCGACTTTCGGCGGTTATGTATTCACTCTATGTAATCGTATATTGGTTAAAAACCCACGAAATTTTATCGCATGGGAGTCGGGTATTACTTTTGAAAACCACCATACATCCGCATGGGGCTATGGTAACTGGGTCGTCGGCGGAGAGATAAAGTACGGTTCAGGGTGCGCCGTTTTGTTTATCCGCAATGACGGCGGTGAAGACCATGATGGCGGGGTCAGGGATTTAATATCATATCGCGTTGGTGAATCTGGAGTTAAAACTTATCAAAACGAGATTGGTGGAAGGTCCGCCCGAAACTACCGTCTGGTGTTTGATAACATTACGACCATACAGTGCTATTACGACGGGATAGATATCAACGCGGATACAGGCTCCCAGGTTGAGCGCGTAGATGATTACCCGCTCTCCCAATACCCCTGGTTTCAGTTGCCGACTGAACACATCATCCGCAATATCATTACACGTGACTGCATGGGTATCGGCGCGTGGTGGGATGGGCAAAGAAATATCATTGATAATGTTGTAACCTACGAGGCCCATAAAGAGGGTATTTTTGATAGAGGTACTAACAACGACATCACTAACGTAACAGTTATCGGCGCAAACAAGGACGTAGTTAACGTTAACCAGCTTACTTGCGAGGGCAGTAGCAGATTGCGGGGCGTTATGATTCATGCCTACTCCACGCAAGGGTATGCTGTATACGCACCACAATCGGAAATATCCGCTGTCGCTTGCGCAGGGAGCGGGACCAAGAAAATACTTTGTACCTATGTCAGTGATGTGCAAGGGGGTAACATCAATGTCCAACACAATGAAAACCAGATGACACTCGCTATGCGCCCTGCGATGCACGGTACCATAAATCCATCACTATTGATGACCGCAGATTGCCAAGTGGCGGCACCTGGTGGGGAGGCAAGCATTGTGAAGCTTTCCGCAATCCAGGAGGGGGTGCGCGTGGGCGAGATGCAGCTTAACCGCTTAGGCTTTAAGCATATGAGCATACCAGTAGCCCCATCAGCTCTACCGGAAAGCGCATTAGAGCATAATTCATCTATAGGCTTTTTCTTTGGAAATGACGGGGYGCTGCGAATCCTCATCAAGAAACCAGACGGGACTTACAAAACCCACGACTTATCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d6e39fe3626f3db65619af709a064c585f869159147df15f3cb0ac0951eeeea4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9092
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel virulent Salmonella virus vB_SalS_TU03 infecting Salmonella spp. clinical isolate Nepal,R. and Malla,R. 2022-03-21 — GenBank