Protein

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Genbank accession
XYM57907.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADRFPLIVNASSRKIEELVAGDNLDLTGNGVAISGSTGLSDQYLKSNGSTLEWAYPGDVYTTASQVVSNKTFQDCTISGATNIMSAIPNAALVNSSISINGAQVALGGSTTISNTDTTYSISAQDGSTGGQKIIRLTDSSSNTDDVTLEAGTNMSVARIGDVITFSSSFTDTDTVTTIESAVGGSAVSGSVIIDAAGFASVSQSGNTITITGSNVDTVTEVRAGTGQTLKSGKFTFLQGGATTLTQSLNVGTGEEEITVSSVDTITRLKGGNTGSLTSGDITVTGGNNVTVSQSGATIEVSSTDTNTITQLASGSNSLSSGNFRFTTAGAASIAQNTVGGVTTFEITSANDDTGASFTANGGVLKNNFNFELKNNNNFGANTLLKWDSGNSQLANSIITDDGSTVTVTGDLVVSGSQTTLDTTTLRVEDNIIELRKGSSIVGADGGIQVNRTTNADESVTSFIQLAWYEAGGYWRSFDGSITNRLVTETETQTLTNKSLTSPTLTSPILGNATCTTINGIALSQSANSTLTIADTKQVEFKRDLQFTSDNNSQQININFRLGGEVAYKSDTLASFSSTTSTQLRGLITDTTGTGSVVFQQSPIFLTSIVTTSTAFDCLVSGVTNLNFGTAATTLNMGNSSGTTTINGDLVVEKDLTVGTSVADTITINGILNSENSDISIRGGDTVPMIVGRGGGSVATNTAMGNKALQANNAGGNCTAFGYEALFVNDSDNNTAFGYQALKINSDGEKNVAIGAGSMTLNEDGLRNCALGMNSLQNNTVGNDNVCIGHYAGFNCLGSGNVLIGASPDENATNATYAPPNLTGNNQLVIGSSTEAWIRGNSSFNVTVPNDLTVDGDTILNGSLVVNGTTTTINSNVISVDDKAVELAAVSTVTVTATTTTGSTTITNITPTAGLIPGMEVTSITDGIELGTNCTIVSISGNQAVLSNTVTGNGTASIVANGPSDLAATGGGLILKGTTDKSMIYDGTRSIKYWTFSESLELQAGKQISIANQLLISSTDLGTSVVNSSLTSVGTLTGLDVDGAIRLGGRVKEKVFFSYNTSLTPSSNTLTINTAGANTILGTPASTAINKWAFTSVSLSNGESITLSLILAGNTAATYGDDCSVDGVDISTGVQWSGGSPPTATSNTDILTFIIVKDNSGVTKVFGQGNTDFS
Physico‐chemical
properties
protein length:1174 AA
molecular weight: 119998,33270 Da
isoelectric point:4,22322
aromaticity:0,05026
hydropathy:-0,02385

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM57907.1
1 1174
Domain Start End Length (AA) Confidence
N-terminal 1 675 675 0,4941
Central domain 676 874 200 0,6677
C-terminal 875 1174 299 0,8078
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-675
Central
676-874
C-terminal
875-1174

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-CH3
[NCBI] 		3413214 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM57907.1 [NCBI]
Genbank nucleotide accession
PV340851 [NCBI]
CDS location
range 186159 -> 189683
strand -
CDS
ATGGCAGATCGTTTTCCACTTATCGTTAATGCATCTTCCAGGAAGATCGAAGAACTGGTAGCAGGTGACAACCTAGACTTAACAGGAAATGGCGTAGCAATTTCAGGAAGTACAGGTCTATCTGATCAGTACCTGAAGAGCAACGGCAGTACACTAGAGTGGGCGTACCCAGGTGATGTGTACACCACCGCTTCACAGGTTGTATCGAACAAAACATTCCAGGACTGTACCATTTCTGGCGCGACGAACATTATGTCCGCCATCCCGAATGCTGCACTGGTTAATAGTAGCATATCCATCAACGGAGCGCAAGTGGCTCTTGGTGGATCGACTACTATCTCCAACACGGATACAACATACAGCATTTCAGCACAAGACGGAAGCACTGGTGGACAGAAAATCATCCGTCTGACTGACTCCTCTTCCAACACTGATGATGTTACACTGGAAGCAGGAACAAACATGAGCGTTGCCAGGATCGGTGACGTTATCACTTTCTCCTCCAGCTTTACTGATACAGACACTGTTACCACCATTGAATCTGCCGTAGGTGGTTCTGCAGTAAGTGGATCTGTCATCATTGATGCTGCTGGATTTGCATCTGTCAGTCAGTCTGGCAACACAATTACAATCACAGGTTCTAACGTTGACACGGTAACAGAAGTTCGTGCTGGTACTGGTCAGACTCTCAAGTCAGGTAAGTTTACCTTCCTCCAGGGTGGTGCTACTACACTTACACAATCATTAAATGTTGGAACAGGTGAAGAAGAGATCACTGTTAGCTCTGTGGATACTATCACCAGACTGAAAGGTGGTAACACTGGATCACTAACTTCAGGCGACATCACTGTCACTGGTGGTAACAACGTAACTGTATCTCAAAGCGGTGCAACCATCGAGGTTTCATCAACTGATACTAATACTATTACTCAACTAGCATCTGGTAGTAACTCCCTATCATCAGGTAACTTTAGATTTACTACAGCAGGTGCTGCAAGTATTGCACAGAACACCGTAGGTGGTGTTACCACATTTGAAATTACATCTGCTAACGATGACACAGGTGCATCATTTACTGCTAACGGTGGTGTTCTGAAGAACAACTTCAACTTTGAACTCAAGAATAATAATAACTTTGGTGCCAACACCCTACTCAAGTGGGACTCTGGTAACTCTCAACTAGCAAACAGCATCATCACTGACGACGGTTCTACTGTTACTGTTACTGGTGACCTCGTAGTATCTGGTTCCCAGACTACTCTGGACACCACCACTCTACGTGTAGAAGACAACATCATCGAACTAAGAAAAGGTTCTAGTATCGTTGGTGCTGACGGTGGTATTCAAGTCAACAGAACAACCAATGCTGATGAATCTGTAACCAGCTTTATTCAACTAGCATGGTATGAAGCAGGTGGTTACTGGAGATCCTTCGACGGTTCGATTACAAACAGACTGGTCACAGAGACAGAGACACAGACTCTAACTAACAAGAGTCTAACATCACCCACACTGACTTCACCTATACTAGGTAATGCAACTTGCACTACCATTAATGGTATCGCACTATCTCAATCTGCTAACTCCACACTAACGATTGCAGATACAAAACAGGTTGAATTCAAACGTGACCTTCAGTTCACTAGTGATAACAACTCCCAGCAGATTAATATTAACTTCAGACTGGGTGGTGAGGTTGCATATAAGTCTGACACTCTGGCATCATTCTCATCTACAACCTCTACTCAGTTGCGTGGTCTTATCACAGACACAACTGGTACTGGTAGTGTAGTATTCCAACAGTCTCCTATCTTCCTGACCAGTATTGTCACCACGTCCACAGCATTTGATTGCTTGGTAAGTGGTGTAACAAACCTGAACTTTGGTACTGCTGCTACTACCCTGAATATGGGTAACTCCAGTGGTACTACCACAATCAATGGTGATTTGGTTGTAGAAAAAGATCTGACCGTTGGTACTTCTGTTGCTGATACTATTACTATCAACGGTATTCTTAACTCCGAAAATTCTGACATCTCTATCCGTGGCGGTGACACTGTACCGATGATTGTCGGTCGTGGTGGTGGTTCTGTTGCAACTAACACTGCGATGGGTAACAAGGCACTACAAGCAAACAATGCTGGTGGTAACTGTACTGCGTTTGGTTATGAAGCACTATTTGTTAACGACTCAGACAACAACACTGCATTTGGTTACCAGGCACTGAAGATCAACAGTGATGGTGAGAAGAACGTTGCGATCGGTGCTGGTTCCATGACTCTCAATGAGGATGGACTACGTAACTGTGCATTGGGTATGAACTCATTGCAAAATAATACTGTAGGTAATGACAACGTTTGTATCGGTCACTATGCAGGTTTCAACTGCCTTGGTTCTGGTAACGTCCTGATCGGTGCTTCTCCTGATGAGAACGCAACCAACGCTACCTATGCACCACCTAACCTGACTGGTAACAACCAGTTGGTAATTGGTTCTTCTACTGAGGCATGGATTAGAGGTAATAGCAGCTTCAATGTTACTGTACCAAATGATCTTACTGTTGACGGTGATACTATCCTGAACGGATCGTTGGTAGTCAACGGTACGACCACAACTATTAACTCCAACGTCATATCGGTCGATGACAAAGCAGTCGAACTTGCTGCTGTCTCTACTGTAACTGTCACAGCAACAACCACAACTGGTTCTACAACCATCACAAACATCACACCTACTGCTGGTCTGATTCCTGGCATGGAAGTAACTTCCATCACTGATGGTATTGAACTAGGAACCAATTGTACTATCGTTTCTATTAGTGGCAACCAAGCAGTCCTTTCTAACACTGTAACTGGTAACGGTACTGCATCCATTGTTGCTAATGGTCCTTCTGACCTGGCAGCAACTGGTGGTGGTTTGATCCTGAAGGGAACCACTGATAAGAGCATGATTTATGATGGAACTAGATCCATCAAATACTGGACTTTCTCCGAGAGTTTGGAACTGCAAGCAGGTAAGCAGATCTCTATTGCTAACCAACTACTAATCAGCAGCACAGACCTAGGTACATCAGTTGTCAACTCTTCGCTGACATCTGTTGGTACACTAACTGGATTGGATGTTGATGGTGCCATCAGACTAGGTGGTAGAGTCAAAGAAAAAGTATTCTTTAGTTACAATACTTCCCTCACTCCTTCATCTAATACACTAACTATTAATACTGCTGGTGCTAACACCATTCTGGGTACACCTGCTTCTACTGCTATTAATAAGTGGGCGTTCACTAGTGTAAGTTTGAGCAACGGCGAATCGATTACACTGTCTCTGATTCTTGCAGGTAATACTGCTGCTACATATGGTGATGATTGTAGTGTTGATGGAGTAGACATCAGCACTGGCGTACAATGGTCTGGTGGTTCACCACCAACTGCTACATCTAACACTGACATCTTAACCTTTATCATCGTTAAGGATAACTCTGGTGTAACCAAAGTATTCGGACAAGGCAACACAGACTTCAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
af229f65eb103b8312ca641fcfdb1eb40d75255d87abe6371fb81da8c6644303
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7491
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50