Protein

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Genbank accession
QMV34170.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MISQFNQPRGSTSIEVNKQSIARNFGVKEDEVVYFTVGIDLSGFKVIYDESTQRAYSLPSGIVSGTIAISLNEQAILTHSSGSVDLGELAVSREEYVTLTGSFTFGQTVNTKNELLVHADAKYRWDGALPKVVPAGSTPASTGGVGLGAWVSVGDAAFRQEANKKFKYSVKLSDFTTLQDAVTAAVDGLLIDTDYHFTDGDIVDFGGKAITIDCKAKFIGDGVLNWNNLGIGSKVISPHMHTKTTPYTVYRFDDSGNWVTNPTTVLASVAQRLDKGYKPNVNDQDIWASLPDSVKNQVAGATLRINSADNIKIIHPEATMGGYLFTLCNRILVESPRNFIAWESGITFENHHTSAWGTGNWVVGGEIKYGSGSAVLFIRNDGGDDHDGGVRDLISYRVGESGVKTYQNEIGGRSARNYRLVFDNITTIQCYYDGIDVNADTGPATERVDDYSLAEYPWFHLPTKHIIRNIITRDCMGIGAWWDGQLNIIDNVITYEAHKEGIFDRGTNNDITNVTVIGANKDLTNLNQLTCEGGSRLRGVMIHAYTTQGYAVYAPKSEISNVACAGSGTKLILCTYVGDIQGGNINVQHGDNTMTLAMRPAMGGTTNPSLLMTADCQVALPGGEASIVHLSAIQEGVRVAEMQLNRLGFKHMSIPAASSQLPESALEHNSSVGFFFGSDGALRLLAKKPDGSYVTYSL
Physico‐chemical
properties
protein length:698 AA
molecular weight: 75506,75510 Da
isoelectric point:5,41428
aromaticity:0,08739
hydropathy:-0,16905

Domains

Domains [InterPro]
IPR040775
RBD
90–155
IPR040775 IPR015331
IPR040775
RBD
100–155
IPR040775
QMV34170.1
1 698
Architecture
RBD
RBD
RBD 90-155 | RBD 161-695 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QMV34170.1
1 698
Domain Start End Length (AA) Confidence
N-terminal 1 176 176 0,9882
Central domain 177 582 407 0,9891
C-terminal 583 698 115 0,8924
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-176
Central
177-582
C-terminal
583-698

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SentM_sal1
[NCBI] 		2743964 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QMV34170.1 [NCBI]
Genbank nucleotide accession
MT499896.1 [NCBI]
CDS location
range 63360 -> 65456
strand +
CDS
ATGATTTCTCAATTCAATCAACCACGCGGCTCCACTTCCATAGAAGTTAACAAACAATCTATCGCTCGAAATTTCGGTGTCAAAGAAGACGAAGTCGTTTATTTCACTGTCGGTATTGACCTCAGTGGATTTAAAGTAATTTATGATGAGTCTACCCAACGGGCTTATTCTCTTCCTTCAGGGATTGTTTCGGGGACGATTGCAATAAGTCTGAACGAACAAGCTATCCTCACTCATTCTTCTGGTTCTGTTGACCTTGGGGAATTAGCAGTAAGCCGCGAAGAATATGTGACGCTTACGGGTTCTTTCACTTTTGGTCAGACCGTCAACACTAAAAATGAACTTCTTGTTCATGCTGATGCGAAATACCGTTGGGATGGTGCATTACCTAAAGTTGTTCCTGCTGGTTCAACTCCAGCATCAACTGGTGGCGTTGGCTTAGGTGCTTGGGTTAGTGTTGGTGATGCTGCATTTAGGCAGGAAGCTAATAAGAAATTCAAATATTCGGTTAAATTATCAGACTTTACAACGCTGCAAGATGCAGTTACTGCTGCCGTTGATGGCCTTCTTATTGATACTGATTATCACTTCACAGATGGTGATATCGTTGATTTTGGTGGTAAAGCTATAACTATTGATTGTAAGGCGAAGTTCATAGGAGACGGTGTTCTTAATTGGAATAACCTAGGGATTGGATCTAAAGTTATTTCTCCGCATATGCATACCAAGACCACTCCTTATACTGTATACCGTTTCGATGATAGTGGAAACTGGGTAACAAACCCAACCACAGTATTAGCATCTGTTGCCCAGAGACTTGATAAAGGTTACAAACCTAATGTTAATGACCAGGACATTTGGGCATCTCTACCTGATTCCGTTAAAAATCAGGTTGCTGGGGCGACACTACGAATTAACTCCGCTGATAATATTAAGATAATTCACCCGGAAGCTACTATGGGGGGCTATCTATTCACCCTATGTAACCGCATCCTAGTTGAATCCCCGCGTAACTTTATCGCATGGGAATCTGGAATTACCTTTGAAAACCATCACACATCAGCATGGGGCACTGGCAACTGGGTGGTCGGTGGTGAGATAAAATACGGTTCTGGCTCCGCAGTTTTATTTATCAGAAATGACGGTGGTGATGATCATGATGGAGGGGTAAGAGATTTAATATCCTATCGCGTTGGAGAATCTGGTGTTAAAACCTATCAAAATGAAATAGGTGGACGTTCAGCCAGGAACTACCGATTAGTGTTTGATAACATAACTACAATCCAGTGTTACTACGATGGTATTGATGTTAATGCTGACACCGGTCCAGCTACTGAACGTGTAGATGACTACTCATTAGCTGAATACCCGTGGTTCCACCTACCTACAAAACATATCATCCGTAATATCATTACTCGTGATTGCATGGGAATTGGTGCATGGTGGGATGGTCAACTGAACATTATTGATAATGTTATTACCTATGAGGCTCATAAAGAGGGTATTTTTGATAGAGGTACTAACAATGATATTACTAATGTAACAGTTATAGGTGCAAACAAAGATTTAACTAACCTAAATCAGCTTACATGTGAAGGTGGCAGCAGATTGCGAGGCGTTATGATTCATGCATACACCACACAAGGATATGCTGTTTATGCGCCAAAATCTGAAATTAGTAATGTAGCGTGTGCAGGGTCTGGCACTAAACTTATACTTTGTACGTATGTTGGTGATATTCAGGGTGGGAACATAAACGTACAGCACGGTGATAACACCATGACCCTGGCTATGCGTCCAGCAATGGGGGGAACAACAAACCCATCATTGCTTATGACAGCAGATTGCCAAGTGGCGTTGCCAGGAGGTGAGGCAAGTATTGTTCACCTGTCAGCTATACAGGAGGGTGTACGCGTAGCTGAGATGCAGCTTAACCGACTTGGCTTTAAGCATATGAGCATACCTGCTGCCTCTTCACAATTACCAGAGAGCGCTTTGGAACATAACTCGTCTGTAGGATTCTTTTTTGGCTCTGATGGAGCATTGCGACTTCTTGCTAAGAAACCCGATGGGTCATACGTAACATACTCACTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
08778ca248204adfcdda9d4b340d5d7fddd5c23d5999f64931073141bb5a0799
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6885
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification and Characterization of Three Lytic Bacteriophages Specific for Salmonella enterica Typhimurium With Potential for Bio-control El-Arabi,T.F., Sharaf,A., Kourany,A.A. and Othman,B.A. 2025-02-08 — GenBank