Protein

View in Explore
Genbank accession
AUS02787.1 [GenBank]
Protein name
pectin lyase fold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MARTYGSAHYVVTDDGTSIEEDAKELNVISTGSTEARSLGDRFADVVNVKDFGAVGDGITDDSGFIQAAVDHSKSIFIPPGDYLLSKPIEISQSNSEIVGVKGESILRVDGSHSALTIINEFTAENVRVVSINFDTTSNGIGKGIYNVAPAVYLAHWVIRDCTFSTHLNYGIDANMIGCEVTSCMFGYHARGAVGMQAIRSRGSQNSPIRVSNINKFDSCEFARCDNMPYVVEFDIGIRVEFTNCVFEVNKPQYSVVRLNGVYKPVFQGCWFEVNDADSLVSLGLKDGIDALALSFTDGIINETGSTITAAFDFTDTQNKTLIFENTLISQGSFDLTKVDSGDVTVLSQKGNYSTNSQIDMGVYDKAFFGTGVKTTGIEGEDALFSGLFQVTAKSTSTTQYSRTYQIIGSNSFKTTTDLEIPYANTNAGGIAIIRGTLSNGRSFSTLYAVSIRVGSGNDVDAAEIGNSGVYAPSFTFANEGGFLTISNDDAAGTSYCTLIGF
Physico‐chemical
properties
protein length:502 AA
molecular weight: 53815,14900 Da
isoelectric point:4,55925
aromaticity:0,09960
hydropathy:-0,03665

Domains

Domains [InterPro]
IPR012334
STR
29–346
IPR012334
IPR012334
STR
35–346
IPR012334
IPR011050
STR
44–358
IPR011050
IPR024535
ENZ
47–148
IPR024535
AUS02787.1
1 502
Architecture
STR
STR 29-358 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUS02787.1
1 502
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,9817
Central domain 64 347 285 0,9815
C-terminal 348 502 154 0,9002
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-347
C-terminal
348-502

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 2.275.O._10N.286.54.E11
[NCBI] 		1881285 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS02787.1 [NCBI]
Genbank nucleotide accession
MG592671 [NCBI]
CDS location
range 120564 -> 122072
strand -
CDS
ATGGCAAGAACATACGGCTCAGCCCATTATGTCGTTACAGATGATGGAACGTCGATAGAAGAAGATGCTAAAGAATTAAATGTCATTTCTACTGGAAGTACTGAGGCTCGCTCGCTAGGTGATCGTTTTGCTGATGTTGTGAATGTAAAAGACTTTGGAGCAGTAGGTGATGGAATTACAGATGATTCTGGTTTTATCCAAGCAGCAGTTGATCATTCAAAGAGTATTTTTATCCCACCAGGAGATTATCTACTTTCTAAGCCAATTGAGATTAGTCAATCTAATTCAGAAATAGTTGGTGTTAAAGGCGAATCAATTTTACGTGTGGATGGCAGCCATTCAGCACTTACTATCATTAATGAATTCACTGCTGAGAATGTCAGAGTTGTAAGTATTAATTTCGATACTACATCTAACGGTATTGGAAAAGGAATATACAATGTAGCCCCAGCAGTGTACTTAGCTCACTGGGTGATTAGAGATTGCACATTCTCAACACATCTTAATTATGGAATTGATGCTAATATGATTGGGTGTGAAGTAACATCTTGCATGTTTGGATATCATGCTCGAGGTGCTGTTGGTATGCAAGCTATAAGATCGCGAGGTTCACAGAATTCTCCTATTAGAGTATCTAATATTAATAAATTTGACTCATGTGAATTTGCTCGTTGTGATAATATGCCTTATGTTGTAGAATTTGATATTGGTATCCGAGTCGAATTTACCAACTGTGTTTTTGAAGTCAATAAACCTCAATACTCAGTAGTTCGACTAAACGGTGTTTATAAGCCAGTTTTTCAAGGCTGTTGGTTTGAAGTTAATGATGCTGATTCGTTAGTTAGTCTAGGCTTAAAAGACGGCATCGATGCCCTAGCTTTAAGTTTTACAGATGGTATTATTAATGAAACGGGTTCTACTATAACAGCAGCATTTGATTTTACTGATACCCAAAATAAAACATTAATATTTGAAAATACTTTAATTTCACAAGGTTCGTTTGATTTAACTAAAGTTGATTCTGGAGACGTTACTGTTTTAAGCCAAAAAGGAAACTATTCAACTAATTCTCAGATAGATATGGGAGTCTATGATAAAGCCTTTTTTGGTACTGGCGTGAAAACGACTGGTATAGAAGGCGAAGATGCATTGTTTTCAGGACTGTTTCAAGTTACAGCAAAAAGCACATCTACAACACAATATTCTCGAACTTATCAAATAATAGGCTCGAATTCATTCAAGACAACAACCGATCTAGAGATTCCATATGCAAATACAAACGCTGGTGGAATTGCAATAATTAGAGGAACACTATCAAATGGTAGATCGTTCTCAACGCTATATGCTGTAAGTATACGTGTAGGCTCTGGTAATGATGTTGATGCTGCTGAAATAGGAAATTCTGGTGTGTATGCTCCTAGTTTTACTTTTGCTAATGAGGGCGGATTCTTAACTATATCAAATGATGATGCTGCAGGTACATCATATTGCACACTAATTGGATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
29d73abc0897f75698272b5145731c57ca4c9d3682efc7e056185a9c897d2459
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7676
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank