Protein

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Genbank accession
YP_009639754.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTLVKIDIRNVASETHPDDRVLLRSATLREASGGGLISTAETSITLVDGVGEVELAPGSVVVNFQCRGISDTRAKSGTVPDEGTVDIAEVIEEGLTFTPPVVNRALDLIRSERDHLLTDMETTVSEAVEGELGTAVRSAQAAAVTAEQEATSANARATSAESSAGNAVTRVEALEAMGGLSPESPVDGQTANLVTQAGTLTRDAVNATVHAGSGSVSVTSFGALGDGVADDTEAINAAIQYAYSQGIRRVTIPNGVYMIRADDPDSPSPYRYLQDSGGIELLSGIHLEMSADATLKAIPNAEPRYCVIRVYHKENVKISGGRIIGDRYEHTGTTGEWGYGIAVTAGENIIIEDVYCADFWGDGINVQRLRDEHNTHARNVIVRNCTSTGNRRQGMSVEGVEGLRVQGGEFSHTNGTHPQAGIDLEPASEGPIMTDIKITDVLFRGNNGSGLQATMVMNISDLVVEGCTFESNRTNGNNNFQFRYYSHGNNVTVRNCLFLDTPVDGGSIGIQGGTNVLVEGCRTDGQISYGRRPTMPAGDIVIRNCVVSTDKTPNALIMVSDATIALVEGNEVEVTNGSGSNVRGIYLASRDIDNVVVRGNTVRGTNWGIETTTPGPKLSAIENNTIEWTHLYGIRVRGGDVCSITGNRVNNSHLGNTESSNTEAVPVNATGMVILRGNTISKIPYPGLPPEMVGKESAFTVGIGVASNVGSLLDAGGNVGAGDFMVVQNRIPAPPVVE
Physico‐chemical
properties
protein length:738 AA
molecular weight: 77781,65550 Da
isoelectric point:4,79547
aromaticity:0,04336
hydropathy:-0,17263

Domains

Domains [InterPro]
DC_1834
STR
49–236
DC_1834 IPR039448 IPR006626 IPR006626 IPR012334
IPR011050
STR
212–476
IPR011050 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR012334
STR
215–482
IPR012334
IPR024535
ENZ
216–260
IPR024535 IPR006626 IPR006626 IPR006626 IPR006626 IPR039448
IPR011050
STR
474–680
IPR011050
IPR011050
STR
474–683
IPR011050
YP_009639754.1
1 738
Architecture
STR
STR 49-685 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009639754.1
1 738
Domain Start End Length (AA) Confidence
N-terminal 1 227 227 0,9877
Central domain 228 727 501 0,9949
C-terminal 728 738 10 0,5233
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-227
Central
228-727
C-terminal
728-738

Taxonomy

  Name Taxonomy ID Lineage
Phage Corynebacterium phage phi674
[NCBI] 		2052822 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Corynebacterium glutamicum
[NCBI] 		1718 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009639754.1 [NCBI]
Genbank nucleotide accession
NC_042355 [NCBI]
CDS location
range 18390 -> 20606
strand +
CDS
ATGACACTGGTAAAGATTGATATTCGGAATGTAGCATCTGAGACACACCCAGATGACAGGGTGCTGCTCAGATCAGCCACATTGAGAGAGGCATCTGGTGGAGGTTTGATCTCTACAGCTGAAACCTCTATCACTCTGGTGGATGGTGTGGGTGAGGTGGAGCTTGCCCCCGGCTCTGTGGTGGTTAATTTCCAATGCAGGGGCATCTCAGATACCCGCGCTAAGAGTGGCACCGTACCGGATGAGGGCACGGTAGATATTGCTGAGGTTATTGAAGAGGGTCTAACGTTCACACCACCTGTGGTAAATCGCGCTTTGGATCTGATCAGATCTGAGCGTGACCATCTTCTCACAGATATGGAAACCACTGTATCTGAGGCAGTAGAGGGTGAGCTTGGAACTGCTGTGCGGAGCGCACAAGCTGCAGCAGTAACAGCAGAACAGGAAGCCACATCAGCTAATGCACGTGCCACATCAGCGGAATCATCAGCGGGAAATGCAGTTACCCGCGTTGAAGCATTGGAGGCTATGGGTGGTCTATCTCCAGAATCACCTGTGGATGGTCAGACTGCTAACCTGGTCACACAGGCAGGCACACTAACCCGTGATGCTGTCAATGCGACAGTACATGCAGGGTCTGGTTCCGTTTCGGTGACTAGTTTCGGGGCACTTGGGGATGGTGTCGCTGATGATACGGAGGCTATCAATGCTGCGATTCAATATGCCTACAGCCAAGGTATTCGACGGGTTACCATACCAAATGGCGTTTACATGATTCGTGCTGATGACCCTGATTCTCCCTCCCCGTACAGGTACCTACAGGACTCTGGAGGCATTGAACTGCTTTCGGGTATCCACCTAGAAATGTCTGCTGATGCTACCTTAAAGGCAATCCCCAATGCCGAGCCACGATACTGCGTAATTCGCGTTTACCATAAGGAAAACGTAAAGATTAGTGGGGGACGGATTATAGGTGATAGGTATGAGCACACTGGCACTACAGGTGAATGGGGCTATGGTATAGCAGTCACCGCAGGGGAAAACATCATTATCGAGGATGTTTACTGTGCTGATTTCTGGGGGGACGGAATCAACGTCCAGCGACTTAGGGACGAGCACAATACCCATGCCAGAAATGTGATTGTCCGAAATTGCACGTCCACAGGTAACCGCCGGCAAGGTATGAGTGTGGAGGGGGTAGAGGGTCTCCGTGTTCAAGGTGGGGAATTCTCACACACCAATGGTACCCATCCACAGGCTGGGATTGATCTTGAGCCAGCCTCCGAGGGTCCTATTATGACGGATATTAAGATTACAGATGTCCTTTTCCGTGGCAATAATGGATCTGGCTTGCAGGCCACAATGGTGATGAATATTTCTGACCTAGTGGTTGAGGGTTGTACTTTTGAATCCAACCGCACCAACGGAAATAACAATTTCCAGTTTCGGTACTACTCACATGGAAATAACGTCACTGTGCGTAACTGTCTATTTTTAGATACCCCAGTTGATGGTGGGTCAATTGGTATTCAAGGTGGCACCAATGTTCTTGTAGAGGGTTGTCGTACTGATGGTCAGATCAGCTACGGACGTAGACCAACCATGCCAGCAGGCGATATTGTGATCCGTAATTGCGTAGTGAGTACCGACAAAACCCCCAATGCCCTTATTATGGTAAGCGACGCTACAATCGCACTGGTAGAGGGCAATGAGGTTGAAGTAACCAACGGGAGTGGCTCAAACGTCCGTGGGATATACCTGGCATCAAGAGATATTGATAATGTCGTCGTGCGAGGCAATACGGTTAGAGGCACAAACTGGGGGATCGAAACCACGACACCTGGACCTAAGCTATCTGCCATAGAAAACAACACCATAGAGTGGACACACCTATACGGCATACGTGTACGCGGGGGTGACGTATGTTCCATCACTGGAAACCGCGTGAACAATTCACACTTAGGGAACACTGAATCCTCCAACACGGAGGCTGTGCCAGTAAATGCCACAGGTATGGTAATTCTTCGTGGAAATACTATCTCAAAAATACCGTACCCAGGACTTCCCCCTGAGATGGTCGGTAAGGAATCAGCTTTCACTGTGGGTATCGGCGTGGCATCTAATGTGGGTTCACTTTTGGATGCAGGTGGGAATGTTGGGGCTGGGGATTTCATGGTTGTACAAAACAGAATTCCAGCACCGCCAGTGGTGGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ea445966e6626cc02403e06b4b075697cf73374804edf9f9d39ba7a26ac515d1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete nucleotide sequences and annotations of phi673 and phi674, two new lytic phages of Corynebacterium glutamicum ATCC 13032 Yomantas,Y.A.V., Abalakina,E.G., Lobanova,J.S., Mamontov,V.T.A., Stoynova,N.V. and Mashko,S.V. 2018-05-15 — GenBank