Protein

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Genbank accession
YP_010080914.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNKAYTWNEKTGLDFCKELPQWNLLTRSNLRFLTGDTSEDPDKFDPSHYFKLNALSEVDRTSQFPSDWHRPYSLGIRLYNPKNASGTWGWTYWTHWEKLPVKPNLTQGKKMGVSMRLANFGRKPLDFNLKLLYGNTSTSVGTYKVEPWQYVFVSELVTLQTTETAKNLGLTVELDSTGQEEQIGLFFPKIEMDKVTPYVTTEEEYNYFKSQDMADSRPVYTGYSDSDSNDFRDYVWGGQLNDENYELFGGDTKQNAVWCYCRPLNQRVLIGIDSDIYTNASGRTVNFHVLNGSKSVFDMTGNTLYPEQFQDDRQAFDGVGNDWATIQEPLYVVDQNTAIDPVAGEMANVCIEGYHYKQASQGYRVDEIPRSAILNVGYSLGSYYVNEDSGKEVNVMRSRVGVTPPQVFGEPSYSSMNDWMTTYGLPNGLIMRPWRVRMVDTETNLTKIKGISIGWNVSLFQKFLATDHVTEDWFRGYDNKRTKAIPDRVLFINDKARKAWLYKFNPTKSAWERSVEYTIPASDTALLKAWTIVPKDGAMNGHIVFTDKTNAEMLQNIRPNWLDYDEFTPKVQYDEVKYNPQMFTNLYNTRYQWWGIKDENPQNQSYGPCVPYEMDFMTGLCKLERIYE
Physico‐chemical
properties
protein length:628 AA
molecular weight: 72616,49110 Da
isoelectric point:5,17919
aromaticity:0,13694
hydropathy:-0,63201

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010080914.1
1 628
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,0283
Central domain 201 491 292 0,9223
C-terminal 492 628 136 0,1831
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-491
C-terminal
492-628

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage vB_Llc_bIBBAm4
[NCBI] 		2305485 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010080914.1 [NCBI]
Genbank nucleotide accession
NC_055001 [NCBI]
CDS location
range 17554 -> 19440
strand +
CDS
TTGAATAAGGCATATACTTGGAACGAAAAAACAGGGCTAGACTTTTGTAAAGAGTTACCACAATGGAACTTGTTGACACGTTCAAACCTTAGATTTTTAACAGGGGATACATCAGAGGACCCAGACAAGTTTGACCCTAGTCATTATTTTAAACTGAACGCTTTAAGCGAAGTAGACAGAACTAGCCAGTTCCCTAGTGATTGGCATAGACCTTATAGCTTAGGAATTAGGCTTTACAACCCTAAAAACGCTAGTGGAACATGGGGGTGGACTTATTGGACACATTGGGAAAAATTACCAGTTAAGCCTAACCTCACACAAGGCAAAAAAATGGGTGTATCAATGCGTTTAGCTAACTTTGGTAGAAAACCATTAGACTTTAATTTAAAACTATTATACGGTAATACTTCGACTTCTGTGGGTACTTATAAAGTTGAGCCGTGGCAATACGTTTTTGTTAGTGAGTTAGTTACGCTACAAACTACGGAAACGGCTAAAAACTTAGGTTTGACTGTTGAACTTGACAGTACAGGACAAGAAGAACAAATCGGCTTGTTTTTCCCTAAGATTGAAATGGACAAGGTAACACCATACGTTACAACAGAAGAAGAATATAACTATTTTAAGAGCCAAGACATGGCAGATTCACGACCTGTTTACACAGGGTATTCTGATTCAGATAGTAACGATTTTAGAGATTACGTTTGGGGTGGACAACTGAACGATGAAAATTATGAACTATTCGGAGGAGATACAAAACAGAATGCCGTATGGTGCTATTGTCGTCCTCTTAATCAACGTGTATTAATTGGAATTGATTCTGATATATACACTAACGCAAGTGGTAGAACAGTTAATTTTCACGTTTTAAACGGTTCTAAGAGCGTGTTTGACATGACAGGGAACACTTTATATCCTGAACAATTTCAAGACGACAGACAAGCGTTTGACGGAGTGGGGAACGATTGGGCAACCATACAAGAACCGTTGTACGTAGTGGACCAAAACACAGCGATTGACCCAGTAGCAGGAGAAATGGCGAATGTATGTATAGAGGGTTACCACTATAAACAAGCAAGTCAAGGTTATAGAGTTGATGAAATACCACGTTCAGCAATTTTAAATGTTGGTTACTCTTTAGGTTCTTACTACGTGAATGAAGATTCAGGCAAAGAAGTTAATGTCATGCGTTCAAGGGTTGGTGTAACACCTCCGCAAGTGTTTGGAGAGCCAAGTTATAGCAGTATGAACGACTGGATGACTACATACGGACTACCAAACGGACTAATCATGCGACCTTGGAGGGTTAGAATGGTAGATACAGAAACGAACTTGACTAAAATCAAGGGTATTTCAATCGGTTGGAATGTTTCTCTGTTCCAAAAATTTCTAGCAACAGACCACGTGACAGAGGATTGGTTTAGAGGTTATGACAACAAGCGTACTAAGGCAATACCAGACCGTGTTTTATTCATCAATGACAAGGCAAGAAAAGCATGGCTTTATAAGTTCAACCCTACCAAGTCAGCATGGGAACGTTCGGTAGAATACACCATACCAGCTTCAGACACGGCACTATTAAAGGCTTGGACCATTGTACCAAAGGACGGTGCTATGAATGGGCATATAGTTTTCACAGACAAAACTAACGCTGAAATGCTTCAAAATATTCGACCTAACTGGTTAGATTATGACGAGTTCACTCCTAAAGTGCAGTATGATGAAGTCAAGTATAACCCTCAAATGTTCACGAACTTGTACAATACACGCTATCAATGGTGGGGAATTAAAGACGAAAACCCACAAAATCAGTCTTACGGTCCTTGTGTTCCGTATGAAATGGACTTTATGACAGGTCTATGCAAATTAGAAAGGATATATGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e579dfcc6750647fa7610a6c6e2dceb06be3db261e155e538fed63f77d82d22a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3756
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lactococcus Ceduovirus Phages Isolated from Industrial Dairy Plants-from Physiological to Genomic Analyses Chmielewska-Jeznach,M., Bardowski,J.K. and Szczepankowska,A.K. 2020 — GenBank