Protein

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Genbank accession
APU00139.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGYFRTEDIHTYVNDVEVSNVINPQSPHLVLITPAPPSGSDVLIRREMPIEKPYADFSRGNNFGHRQVNNTFLQQLYLTQEILDGFLPDGYYMKQDIDMGGNKISNVADAELLDDAATYRQLQANSNKQDAWNRLQDSRISLLEIGQGGSTNANDLLVTARGGTEARKLSEHFSDDLNVLDFGAINSTTLDSTDAFKRAFSVANLFNKRLIATGDFCIKSGEIVAKSSFDFSRAKLHIREGSGDAIAIQSLYNEEEISQEVTVSELKEGTANIPSLDKHRGKCIIIKSRELDINRAPGSRDVNGNLLPPQPQYKAETNAFAKTNTSGREGGGALVYPLLYSYNSVSSIIVRKLDVYAEFYLPEFVCYSTDGINLVSVIRSNTRLIGGKYTEGSRDGDSSPVINAITISKCFNVSTDYASIDSMSSSNKPYSYAVLLTDVAKCRINNITCLSTWSGINGNRYRDLVIKDSEVYSIGVHHSGWDIRVYDSVIQVKANLMGGNLFLLEGCTFPYQYTLVQLRDDYGARWRGDIVIRNCMTDSTSSQLWSSKYRLIDAYITKNTDEWSYDSSEPLGIRGRVIVEGMRFTGDSAGTIMRIGKVNEGASEVVYSPREIIVSDCDFTGGHNPRIQIERWGGTGSGGTTVRYKGCKFNQNYQTVALEYPNAGNKDNNNSYALEFEDCSGLKPYFSAYHKSVVFRDCEIYGVAGSASDQYYPYVVSYYNCRLHDGSYRTNNIGQRYLNCELVGDDVYIMHYPTLISFSGNWMHPKYRWNPVRDTLEKQHFPWVGSYMTKRDFLEPDGSQVRFSVKAQTYVDIAVGMYISTSGGRIYKVTEIDKTVNNTSRTVPLWSKGGSREFGRIYKHKGEMYSSIGTGTFDETPDVINSKYSGVTDGRLMPVGKIRHVVYLASEDAEAFNNLVTDEDAVINGVTYSFIEDLNDYIK
Physico‐chemical
properties
protein length:939 AA
molecular weight: 105029,15860 Da
isoelectric point:5,60924
aromaticity:0,10650
hydropathy:-0,40841

Domains

Domains [InterPro]
DC_1609
STR
1–220
DC_1609 IPR011050
DC_0944
STR
163–934
DC_0944
APU00139.1
1 939
Architecture
STR
STR 1-934 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APU00139.1
1 939
Domain Start End Length (AA) Confidence
N-terminal 1 191 191 0,9942
Central domain 192 808 618 0,9871
C-terminal 809 939 130 0,6924
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-191
Central
192-808
C-terminal
809-939

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vp670
[NCBI] 		1932890 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APU00139.1 [NCBI]
Genbank nucleotide accession
KY290756.1 [NCBI]
CDS location
range 2385 -> 5204
strand +
CDS
ATGGGGTACTTCAGAACAGAGGACATACACACGTATGTAAACGATGTGGAGGTATCAAATGTTATAAACCCACAATCGCCCCATCTTGTTCTTATAACACCAGCCCCACCTTCTGGGTCTGATGTTCTTATAAGGAGAGAGATGCCGATAGAGAAGCCATATGCTGACTTCTCTCGTGGTAATAATTTTGGACATAGACAAGTTAATAACACGTTCTTGCAACAGTTATATCTTACTCAGGAAATTCTTGATGGATTCCTACCTGACGGATACTACATGAAGCAAGATATAGATATGGGAGGTAATAAGATTAGCAATGTCGCCGATGCAGAACTGCTTGACGATGCTGCTACATACCGACAACTGCAAGCCAATTCGAATAAACAAGATGCTTGGAATAGATTACAAGATAGTCGTATAAGCTTATTGGAAATAGGGCAAGGTGGCTCAACTAACGCTAACGATTTACTAGTAACAGCAAGAGGAGGGACAGAGGCTCGTAAACTTAGTGAGCACTTTTCTGACGACTTAAATGTTTTAGATTTTGGAGCAATTAACAGCACTACTTTAGACAGCACCGATGCTTTCAAAAGAGCATTTAGTGTCGCAAACTTGTTTAATAAGAGATTAATAGCAACTGGTGACTTCTGTATTAAGTCAGGAGAGATTGTAGCTAAGTCTTCATTTGACTTCAGCAGAGCCAAGTTACACATAAGAGAAGGTAGTGGAGATGCTATAGCTATCCAGTCACTATACAACGAAGAAGAGATTTCGCAAGAAGTTACTGTATCAGAACTAAAAGAAGGTACTGCAAACATCCCTTCGTTGGATAAGCACAGAGGTAAGTGCATTATTATAAAAAGCCGAGAGCTTGACATAAACAGGGCACCAGGTTCTCGTGATGTAAATGGAAATTTGCTTCCACCTCAGCCTCAGTACAAAGCAGAAACTAATGCTTTCGCAAAAACCAACACATCGGGAAGAGAAGGCGGAGGGGCACTGGTGTACCCTTTATTGTACAGTTATAACAGCGTAAGTAGCATTATCGTTAGGAAGCTTGATGTCTATGCAGAGTTCTATCTTCCCGAGTTTGTATGTTACTCCACAGATGGTATAAACCTAGTAAGTGTTATTCGTAGTAATACAAGGTTGATAGGCGGTAAGTACACAGAGGGAAGTCGCGATGGAGATAGTTCACCTGTTATAAATGCAATAACAATCAGTAAATGCTTCAACGTAAGCACTGATTATGCAAGTATTGATTCGATGTCATCTTCTAATAAACCATACAGCTATGCTGTACTGCTAACTGATGTTGCCAAATGTAGAATCAACAACATAACTTGCTTAAGCACATGGTCAGGCATTAACGGTAATAGGTACAGAGATTTAGTAATCAAGGATAGTGAAGTTTATTCCATAGGGGTGCACCACTCAGGTTGGGATATCCGAGTTTACGACAGTGTAATACAGGTCAAAGCAAATCTGATGGGAGGGAACTTATTCTTGTTAGAGGGCTGTACTTTCCCATACCAGTACACACTAGTGCAACTTAGGGACGACTATGGAGCTAGGTGGAGGGGTGATATTGTAATCAGAAACTGTATGACAGATTCAACATCTTCTCAACTATGGTCAAGTAAGTATCGTCTAATTGACGCATATATTACAAAGAATACGGATGAGTGGAGTTACGACTCCTCAGAGCCTCTTGGTATACGTGGTAGAGTTATCGTGGAAGGGATGAGATTTACTGGTGATTCGGCAGGTACTATAATGCGTATAGGCAAAGTTAATGAGGGAGCGTCTGAAGTCGTATACAGCCCTAGAGAGATTATAGTAAGTGATTGTGATTTCACAGGAGGACATAACCCACGCATACAAATAGAGCGTTGGGGTGGTACTGGGAGTGGTGGTACTACAGTAAGGTACAAAGGTTGCAAGTTCAATCAGAATTACCAAACAGTAGCACTTGAGTACCCGAATGCTGGTAACAAAGATAATAATAACTCATATGCACTTGAGTTTGAAGACTGCTCGGGTCTTAAGCCCTATTTCTCTGCCTATCATAAATCAGTAGTATTCAGAGACTGTGAAATATACGGAGTTGCTGGCTCTGCATCTGACCAATATTATCCTTATGTAGTGTCTTACTATAACTGTAGATTACATGACGGTTCATACAGGACAAACAACATAGGTCAGCGTTACTTGAACTGTGAACTTGTAGGGGATGATGTATACATTATGCATTACCCAACTCTGATAAGCTTTAGTGGTAACTGGATGCACCCTAAGTATAGATGGAACCCAGTAAGAGACACTCTTGAGAAGCAGCACTTTCCTTGGGTTGGCTCCTACATGACCAAGCGGGATTTCCTAGAGCCTGATGGAAGTCAAGTAAGGTTTTCTGTAAAAGCACAGACTTACGTAGACATAGCTGTCGGTATGTACATTAGTACTTCTGGTGGTCGTATCTATAAAGTTACAGAAATTGATAAGACAGTTAACAATACTTCTAGGACAGTACCTCTATGGTCTAAAGGTGGTAGCCGTGAGTTTGGACGCATCTACAAGCATAAAGGTGAGATGTACTCTTCAATCGGTACAGGTACTTTCGATGAGACCCCTGATGTCATAAACTCGAAATACTCTGGAGTAACTGACGGCAGACTAATGCCAGTTGGTAAAATCAGGCACGTAGTGTATTTGGCATCAGAAGATGCGGAAGCTTTTAATAACCTAGTGACGGATGAAGACGCTGTCATAAATGGTGTAACATATAGCTTCATAGAAGACCTGAACGATTACATCAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
0f2ae570008462a92eaf7cbe192e51fc6130ad24664345b2237814cb4b1d8065
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6576
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genomic Analysis of a new Vibrio alginolyticus Phage Vp670, with an Endolysin gene cwlQ Liu,Q., Luo,P., Tian,Y. and Yun,L. 2018-10-11 — GenBank