Protein

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Genbank accession
XUU32401.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNNIKARKGGSSKPRTPVEMPDNLISKDKIKLLLAVSDGEVVNDFSLKQLHFGGVPVQNEDGTFNYEGVIAEFRPGTQTQDYIQGFSESSAEFQVAREVTRNTPYTLTVSNKNLSAIRFRLLWPRVLTQKDNGDMVGSVVEYKIEMAVDGASYQTYLTGKIDGKNTTGGYDRSIRVNLPQNFTSQVLIRVSRVTPDADGVKVVDAFRVESYAEVIDAKFRYPLTAMLYVEFDSDLFQNQIPTISLKKKWKIIQVPRNYDPINRTYSGTWDGVFKWAWSNNPAWVLYDLIMNQRYGLDQRELGIPVDKWSLYEVAQYCDELVPDNRGGMEPRYLIDVIVQSQVEAFQLVRDICSAFRGMTFYNGESLSIIVDKPRDPVYLFTADNVVDGVFVRTFPSEKTMYTSCNVMFDDEENQYEQDVEPVFNPDAAMRFGHNPTSITAIGCTRRTEANRRGRWILQTNLSATTVSFSTGLEGMIPSCGDVIYVADPHWQSAFNLVLSGRVMEVSGVQVFLAYRCDAKAGDTLILNTDDGKPVRRTIASVSADGKTLTLNVGFNFDVAPDSVFLIESDQLAAEQYVVTRIEKGSDDDEFTFAITATQYDPNKYDAIDNGVITDSRPTSIVDPDSLGAPKDLTISSFSRIVQGMSVETMVIGWSAVQYAKLYEVQWRKDGGNWNNVPRTATTQVDIEGIYAGEYQARVRCISGGNVASPWSALATATLTGKVGAPKGPINLFASDDEIFGIRVKWAMPEGAEDTAYIELYQSQSGTDQDASLLTLIPYPAAEYWHSILPAGYVNFYKARSVDRIGNVSAWTDYARGMSSTDVNAITDTILDEILDSDAMKEIQESAQDSAAKLNEYANSIIQNALANDGDVRIMRKENGKRKAEIKHAEVLIANETEARVQQVNQISAEFNENLNAGLTQVNEALANETEARVTSEEALSARIGQNSAALDQKLDSWADVNGVGSMYTMKLGLRYNGQEYNSGMALQLTASGGGVVSQVLFIADRFAIIRNAESGAYTLPFVVQNDQVFMNNALIQDGSITNAKIGNFIQSNNYVSGSRGWSIDKNGNAEFSGVTVRGHIEADSGSFHGTIDATDGIFRGSVEANSFVGDIAAMGPFPTRVGSTWKSRVVHHDSSEKGGKNYAILGLIRWDAGDKTGSVIVECYVNGVRVSSQTYNGRDAGESTRARLTAVGVATGINTKDTLVEIVVSGTGTSSLEAGYCIMSRGSGSWEVVA
Physico‐chemical
properties
protein length:1234 AA
molecular weight: 135582,03230 Da
isoelectric point:4,83941
aromaticity:0,09157
hydropathy:-0,27139

Domains

Domains [InterPro]
DC_0014
STR
1–1230
DC_0014
IPR053171
Unmapped
3–877
IPR053171 Coil IPR015406
IPR055385
ATT
90–217
IPR055385 IPR032876 IPR013783
IPR036116
STR
629–716
IPR036116
XUU32401.1
1 1234
Architecture
STR
ATT
STR
ATT
STR
STR 1-89 | ATT 90-217 | STR 218-340 | ATT 341-489 | STR 490-1230 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XUU32401.1
1 1234
Domain Start End Length (AA) Confidence
N-terminal 1 504 504 0,8760
Central domain 505 983 480 0,0635
C-terminal 984 1234 250 0,4631
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-504
Central
505-983
C-terminal
984-1234

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_Shig_1KOFFS
[NCBI] 		3423636 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XUU32401.1 [NCBI]
Genbank nucleotide accession
PV615260.1 [NCBI]
CDS location
range 33461 -> 37165
strand +
CDS
ATGAATAATATCAAGGCCCGAAAGGGCGGTTCAAGCAAGCCACGTACTCCCGTAGAAATGCCAGATAACCTGATCTCAAAAGATAAGATCAAGTTGTTGCTTGCTGTTTCAGATGGCGAGGTAGTTAACGACTTCAGCCTGAAGCAGTTGCATTTTGGCGGCGTCCCGGTTCAGAACGAGGATGGAACATTCAACTATGAGGGCGTGATTGCAGAGTTCCGCCCCGGCACGCAAACGCAGGACTACATTCAGGGCTTCAGCGAGTCAAGCGCTGAGTTCCAGGTTGCTCGTGAAGTCACTCGCAACACGCCTTATACGCTTACCGTATCGAACAAAAATCTTTCTGCTATTCGCTTTCGCCTGTTATGGCCGCGCGTGCTGACTCAAAAAGATAACGGCGATATGGTCGGATCGGTTGTTGAGTACAAGATCGAGATGGCGGTAGATGGTGCAAGTTACCAGACCTACCTAACTGGCAAGATTGACGGTAAGAACACGACTGGCGGTTACGATCGGAGCATTCGCGTTAACCTGCCGCAAAACTTCACGTCGCAGGTGCTTATCCGCGTTAGTCGAGTAACGCCGGACGCTGACGGGGTGAAAGTTGTCGACGCTTTCCGGGTTGAATCCTACGCTGAAGTTATTGATGCAAAATTCCGCTACCCGTTAACGGCCATGCTTTACGTTGAGTTCGATAGCGATCTGTTCCAGAACCAGATCCCCACCATCTCACTCAAAAAGAAATGGAAGATTATCCAGGTTCCGAGAAACTACGATCCGATTAATCGCACGTACTCCGGAACGTGGGACGGTGTTTTCAAGTGGGCGTGGAGCAATAACCCGGCCTGGGTTCTTTATGATCTGATCATGAATCAGCGCTATGGTTTAGACCAGCGTGAGTTAGGAATCCCGGTTGATAAGTGGTCGCTGTATGAGGTGGCGCAATATTGTGATGAACTTGTTCCTGACAATCGCGGCGGGATGGAACCGCGCTATTTAATTGATGTAATTGTTCAGTCGCAGGTTGAGGCGTTCCAGTTGGTAAGGGATATTTGTTCCGCATTCCGTGGAATGACGTTCTACAACGGTGAAAGCCTATCGATCATCGTCGATAAGCCGCGCGATCCTGTGTACCTGTTTACGGCTGATAACGTCGTTGATGGCGTTTTCGTTCGGACGTTCCCAAGCGAAAAGACGATGTACACGTCGTGCAACGTCATGTTCGACGACGAAGAAAACCAGTACGAACAGGATGTTGAGCCAGTATTCAACCCTGACGCAGCCATGCGATTTGGCCACAACCCAACGAGCATTACAGCGATCGGGTGTACCAGAAGGACGGAGGCGAACCGCCGTGGGCGTTGGATTTTGCAAACGAACCTAAGCGCTACAACCGTTTCGTTTTCTACTGGCCTGGAAGGTATGATTCCTTCTTGCGGAGATGTAATTTACGTTGCAGATCCGCACTGGCAATCGGCCTTTAACCTGGTGCTATCAGGCCGCGTTATGGAAGTGTCTGGCGTGCAGGTGTTCCTGGCCTACCGCTGCGATGCGAAGGCTGGCGACACTCTAATCCTGAATACCGACGACGGAAAGCCTGTGCGCCGCACAATCGCCAGCGTTTCGGCGGACGGTAAAACCCTAACGCTAAACGTGGGATTTAATTTTGACGTTGCGCCGGACAGTGTATTCCTGATCGAGAGCGATCAGCTTGCAGCGGAACAGTATGTAGTAACCCGGATTGAAAAGGGTAGTGATGACGACGAATTCACCTTTGCCATCACGGCTACGCAGTACGATCCGAACAAGTATGACGCGATCGACAACGGGGTAATTACCGATAGCCGACCAACTTCGATTGTAGACCCGGATTCATTGGGCGCTCCGAAAGACTTAACGATTAGCTCGTTTTCTCGCATTGTTCAGGGAATGAGCGTCGAAACGATGGTGATCGGCTGGTCTGCTGTACAGTATGCCAAACTGTACGAGGTACAATGGCGCAAGGATGGAGGTAACTGGAACAACGTTCCGCGCACTGCGACAACGCAGGTTGATATCGAAGGCATCTATGCTGGCGAGTATCAGGCCCGCGTTAGGTGCATTAGCGGCGGGAATGTAGCGTCTCCGTGGTCTGCATTGGCAACCGCCACACTGACCGGGAAAGTCGGAGCGCCGAAAGGCCCGATTAACCTTTTTGCGTCGGATGATGAGATCTTCGGTATTCGCGTTAAGTGGGCTATGCCAGAAGGAGCGGAAGACACGGCATACATTGAGCTTTACCAGTCGCAAAGCGGAACCGATCAGGACGCAAGCCTGCTTACTCTGATTCCTTACCCGGCGGCTGAATACTGGCACTCAATTTTGCCAGCTGGCTACGTGAACTTCTACAAAGCCAGAAGCGTAGACCGGATCGGCAACGTTTCAGCGTGGACTGATTACGCTCGCGGCATGTCGTCGACTGACGTTAACGCCATCACAGATACGATCCTGGATGAGATCCTCGATAGCGACGCGATGAAAGAAATTCAGGAGAGTGCGCAGGATAGCGCGGCAAAACTCAATGAATACGCGAACAGTATCATTCAAAACGCATTAGCGAATGATGGCGATGTTAGAATAATGAGAAAGGAGAATGGCAAGAGGAAAGCTGAAATTAAACACGCAGAAGTTCTAATAGCAAATGAGACGGAAGCTAGGGTGCAGCAGGTCAACCAGATCTCGGCAGAGTTCAACGAAAACCTCAATGCTGGATTAACTCAAGTTAACGAGGCGCTGGCCAATGAAACTGAGGCACGCGTTACTTCTGAGGAGGCTCTATCAGCAAGGATTGGCCAGAACTCCGCAGCGCTAGACCAGAAGCTCGACTCATGGGCTGACGTTAATGGAGTTGGCTCCATGTATACAATGAAGTTGGGCTTGAGGTACAACGGGCAGGAGTACAATTCTGGTATGGCGCTACAGCTTACCGCGAGTGGTGGAGGCGTTGTTTCCCAGGTGCTATTTATTGCTGATAGATTCGCTATCATCCGAAATGCGGAGTCTGGAGCGTACACGTTGCCGTTTGTTGTGCAGAATGACCAGGTTTTCATGAATAACGCGCTTATTCAGGATGGTTCGATTACCAACGCGAAGATCGGCAACTTTATTCAGTCCAACAACTATGTTTCAGGTAGTCGAGGATGGTCAATAGACAAAAACGGGAATGCTGAGTTCAGCGGCGTAACTGTAAGGGGGCACATTGAGGCTGATAGCGGTTCATTTCATGGCACCATCGACGCAACCGATGGGATATTCCGCGGCTCGGTTGAAGCAAATAGTTTTGTGGGAGATATCGCGGCAATGGGGCCATTCCCGACGAGAGTTGGGTCGACATGGAAATCACGAGTCGTGCACCATGATTCAAGTGAAAAAGGAGGGAAAAACTACGCAATTCTCGGACTAATTCGCTGGGATGCTGGCGACAAGACTGGCTCGGTTATCGTTGAGTGTTATGTTAATGGCGTAAGGGTATCTTCTCAAACGTATAATGGCAGAGATGCAGGGGAATCAACCCGTGCTCGCCTAACTGCTGTAGGTGTTGCGACGGGAATCAACACGAAGGATACTTTGGTTGAGATTGTCGTAAGTGGGACTGGCACCAGCTCCCTTGAGGCTGGTTACTGCATTATGTCTCGAGGCTCCGGATCGTGGGAGGTGGTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bbd53dc239c1578e3cb6052685c01dfbf8143dec02072635f51e035b8a8f2041
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8228
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50