Protein

View in Explore
Genbank accession
ATI19033.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKNIVSEGNLSYLLAADRRSIQTTSMGGITYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDLSVVWSLGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEALIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYVGYSNQSQVNLETDLPARLHPSADGALCAVGQSERALVWYRYSSEKGVWLESGDYNSVTAISVDVPYKIVDDNVEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQYTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIAHEYHFTSQGKVHQAWHKWVFPYRVASLHFARDRVVLFAADDDGSTDKITISTIDPKQGGVTFDVDRLPHLDLMSIVPVNDGKGIVPIYMRPWVSEGKLTGSVATGALASEEVAIDVNEVSWEFTVEPGFKDSQIYLGFRYESLFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIVDPTIGLDYSDSTTSLVFGTDDVQLNQALVSDLARVPVPCRSNAQSTEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:780 AA
molecular weight: 85619,01040 Da
isoelectric point:4,86794
aromaticity:0,08590
hydropathy:-0,19500

Domains

Domains [InterPro]
DC_0058
STR
1–780
DC_0058
IPR058003
TTP
9–780
IPR058003
ATI19033.1
1 780
Architecture
STR
STR 1-780
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATI19033.1
1 780
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9925
Central domain 143 341 200 0,0555
C-terminal 342 780 438 0,1899
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-780

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaP_KF1
[NCBI] 		2041472 Uroviricota > Caudoviricetes > Autographivirales > Maculvirus > Maculvirus KF1
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATI19033.1 [NCBI]
Genbank nucleotide accession
MF754111 [NCBI]
CDS location
range 8132 -> 10474
strand +
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTGCAAGGTGTGTCGCAACAAGTTCCACGTGAGCGTGTGGCTGGACAATGCTCTGCGCAAGTTAACATGCTGTCCGACCCAGTAACAGGCATCCGTCGTCGTCCCGGTAGTCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGACGCGCTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTAGTAATTAACACCAACACAGGCGGCTGGTGGCTCTTAGACCGCGAGGCTAAGAACATTGTGAGTGAGGGCAACTTGTCTTACCTCCTAGCGGCTGACCGTCGCAGTATCCAGACTACCAGTATGGGTGGTATCACGTACATTCTGAACACTGAGAAGCGTCCGTCTGCAACGACTGACAACTCTGACAAGAAAGACCCGAAGACAACAGGCTTCTACTTCGTCAAGAGTGGTGCGTTCAGTAAAGAGTACGACCTGTCCGTAGTGTGGTCGCTCGGTAGCCAAACCGTGACGTACACCACGCCAGATGGTACAACCGCAGGTGATGCAGACCAATCTGTACCGGAAGCAATCGCACGTAAACTCGTGGAAGCTCTGATTGCAGTTGGTGTGGACTTCGCTGTGCGTGTTGGCCCGTACATTTACTTCGAATTAATCACAGGTACTGACCTTAAAATCACCAGTACGTCAGGTTCGCCTTACGTCGGCTACTCAAACCAATCACAGGTAAACCTAGAGACTGACCTCCCTGCGCGTCTGCATCCGTCTGCCGATGGTGCGTTGTGTGCTGTAGGTCAATCAGAGCGTGCGCTTGTGTGGTATCGTTACAGTTCCGAAAAGGGTGTTTGGTTGGAATCTGGTGACTACAACTCCGTGACCGCTATTAGCGTGGATGTGCCCTATAAGATTGTCGATGACAACGTGGAGCAACATATCATGGAGGGGCGTCTCGCAGGTGACGACTTAACTAACCCTGCACCGACATTCCTTGAAGAACGCCGCATCACTGGTATCGGTACGTTCCAAGGTCGCTTAGTGCTTCTATCTGGTGCGTACGTCTGTATGAGTGCCACTGGTGAGCCAGACCGTTTCTTCCGCTCTACCGTGAGTTCTCTTGACCCGACAGACCGTATTGATATTGCATCCGGTTCGGCTCAGAACTCAGTGTTCCGTCAAGCGTTGCAGTTCAACAAGGACTTGATTCTACTTGGTGACAGTACACAGGCGGTAGTACCGTCCCTGCAACAGCTACTTGCACCTGATAACGCAAGCGTGGTGTTGACCTCAGATTTGGCCTGTAATGCGTTTGTAGCACCTGTTACAACCTCACAGACCCTGATGTACCCTGCACCTCGAAGCGAAGCATTCAGCGCAGTTCTGGAGCTTGTACCATCACAGTACACATCGTCTCAGTACGTATCTCAAGACGTTACGACTCACATCCCACGTTACATTGAGGGTGAGGCTCGTTTCATGCAGAGTGCGAGTGCTGCGAACATCGTACTAATGGCAACTACTGGCGACAACCGTCAGGTAATTGCTCACGAGTACCACTTCACAAGTCAAGGTAAAGTGCACCAAGCATGGCACAAATGGGTGTTCCCGTACCGTGTCGCTAGTCTACACTTTGCTCGTGACCGTGTTGTACTGTTTGCCGCAGATGATGATGGTAGCACAGATAAAATCACTATCTCGACCATCGACCCTAAGCAGGGTGGTGTGACGTTTGATGTTGACCGTTTGCCGCACCTAGATTTGATGAGCATTGTGCCTGTCAATGATGGTAAAGGTATCGTGCCAATCTACATGCGTCCGTGGGTATCTGAGGGTAAGTTGACTGGCTCTGTTGCTACAGGTGCGTTAGCGTCTGAGGAAGTGGCTATTGATGTGAACGAGGTTTCGTGGGAATTCACTGTAGAGCCGGGTTTCAAAGACTCGCAAATCTACTTAGGCTTCCGCTATGAATCACTGTTTGCACCAACGCCGCCTATGCTGAAAGACCAGAACGATACCTTAATCAGTACTGCTCCGGTTCGACTATTGCGTTATGAGTTGACAACTCGAAATACAGGTGAATTCGATGTACGCATCGTTGACCCTACTATCGGGCTAGACTACTCAGACAGTACAACCAGCCTAGTGTTTGGCACTGACGACGTTCAGTTGAACCAAGCTCTAGTGTCTGACTTGGCACGCGTCCCTGTGCCGTGTCGAAGTAATGCGCAGTCCACTGAAATGTACTTGAGTACTGACGGTACACAGGATATGAACATTCTGGAAATTGAATACATCATTCGTTACAACCAACGCCGACGTCGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
066029a98da2f07f518883f13699417a7104cb1bc50e6e134483405582da7119
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9054
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_VpaP_KF1 Yu,J., Kwak,S.-J., Lim,J.-A. and Chang,H.-J. 2005-02 — GenBank