Protein

View in Explore
Genbank accession
WWO60371.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSLSIVNSVYGLYRTEILRADGTVRWDSGFKPNLITDWGLNQLGYSTGDFVHSCFVGTGTTAPVPTDNKLQAQVMSANNSSQKTSTFGKQIATAPYYSWVQSVWTFDAATANVTLGEMGTGSSGTSLVTRSLMKDADGNPTTITLLIGEVLRVTHVLRNYFDMGDNAGSFEIDGVTYNYSARGVNFRSTGEWQIRGGWAYPDIVSCCTIPADAVWENVGTLDQKTSKSYTDRKIISPSQTPRPPNPSPGITRWVVQFGVNDANYPLGIRYFEMQHTQNNYRDGVSYGILLDKAIPKTNKHQLTLTLDMIYKRHTP
Physico‐chemical
properties
protein length:315 AA
molecular weight: 34786,61650 Da
isoelectric point:7,69108
aromaticity:0,10476
hydropathy:-0,34635

Domains

Domains [InterPro]
DC_0199
STR
4–313
DC_0199
WWO60371.1
1 315
Architecture
STR
STR 4-313 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60371.1
1 315
Domain Start End Length (AA) Confidence
N-terminal 1 166 166 0,3381
Central domain 167 304 139 0,0045
C-terminal 305 315 10 0,9971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-166
Central
167-304
C-terminal
305-315

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage SB2
[NCBI] 		3117468 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60371.1 [NCBI]
Genbank nucleotide accession
PP079416.1 [NCBI]
CDS location
range 37231 -> 38178
strand +
CDS
ATGAGTCTTTCCATTGTAAACTCCGTGTACGGTCTGTACCGTACCGAAATCCTGCGGGCAGACGGTACCGTCCGTTGGGACTCCGGCTTCAAGCCGAACCTGATCACGGATTGGGGCCTGAACCAGCTGGGGTACAGCACAGGTGACTTCGTGCATTCGTGCTTCGTAGGCACCGGTACGACCGCCCCGGTTCCCACCGACAACAAGTTGCAGGCTCAGGTCATGTCTGCAAACAACAGTTCACAGAAGACCAGCACGTTCGGTAAGCAAATTGCCACCGCGCCGTATTACTCGTGGGTACAGAGCGTGTGGACTTTCGACGCAGCAACGGCGAACGTCACCCTCGGTGAGATGGGTACTGGTTCGTCCGGTACGAGTCTAGTCACCCGCTCGCTTATGAAGGATGCGGATGGCAACCCGACCACCATCACCCTGTTGATCGGGGAGGTGCTGCGAGTTACTCACGTCCTCCGAAACTACTTCGACATGGGCGACAACGCCGGTTCGTTCGAGATTGACGGAGTGACGTACAACTACTCCGCCCGAGGCGTTAACTTCCGGTCCACTGGTGAGTGGCAGATTCGCGGTGGCTGGGCCTATCCGGACATTGTATCCTGCTGCACCATCCCGGCTGACGCCGTGTGGGAGAACGTAGGTACGCTGGATCAGAAGACCAGCAAGTCGTATACTGACCGCAAGATCATCTCGCCGAGCCAGACGCCACGACCGCCAAACCCTTCTCCGGGGATCACCCGCTGGGTTGTCCAGTTCGGCGTGAACGACGCGAACTACCCGCTGGGTATCCGGTACTTCGAGATGCAGCACACGCAGAACAACTACCGCGATGGTGTGTCCTATGGCATCCTGCTGGACAAGGCGATCCCGAAGACGAATAAGCATCAGCTTACTCTGACTCTGGACATGATCTACAAGCGGCACACGCCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
44b1993b33cc17c6acc137501712da4c1724d316883d7377a1996b3c66ba8871
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7744
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank