Protein

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Genbank accession
QGF20970.1 [GenBank]
Protein name
putative tail tubular protein A
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MFTELDVVNACLATIGETPLVELDDDHPLVAPARQKIRQATVTVMHRPWWFNTDYVNLAVANDHFIYVPRDAVAVNIPGRSDLTQRGRRLYNRFNSSYEMESGVRAIVTRDLPFEDLPTPAQLHLMNEAVLGFQTDFDGDGTKLQKLNANLAKSYVSLNTEHIRQISLNGLESMFALVNKQRTSPTQRLMGHRSGSGIPVR
Physico‐chemical
properties
protein length:201 AA
molecular weight: 22633,44000 Da
isoelectric point:6,58920
aromaticity:0,07463
hydropathy:-0,31393

Domains

Domains [InterPro]
DC_2080
ATT
1–74
DC_2080 DC_1286
IPR033767
TTP
5–164
IPR033767
QGF20970.1
1 201
Architecture
ATT
TTP
RBD
ATT 1-74 | TTP 75-139 | RBD 140-193 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA13
[NCBI] 		2662284 Uroviricota > Caudoviricetes > Autographivirales > Melnykvirinae > Daeravirus
Host Pectobacterium carotovorum
[NCBI] 		554 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF20970.1 [NCBI]
Genbank nucleotide accession
MN509793 [NCBI]
CDS location
range 27917 -> 28522
strand +
CDS
ATGTTTACTGAACTTGATGTAGTAAACGCCTGCCTGGCGACCATCGGCGAGACTCCTCTCGTTGAACTGGACGATGACCACCCACTGGTGGCACCGGCACGGCAGAAGATTCGACAGGCCACGGTAACTGTAATGCACCGCCCCTGGTGGTTCAACACTGATTACGTGAACCTGGCTGTAGCAAACGACCACTTTATTTATGTGCCTCGTGACGCTGTAGCTGTTAATATCCCCGGTCGCTCTGACCTGACCCAACGGGGTCGCAGGCTGTATAACCGCTTCAACAGCTCCTATGAGATGGAATCGGGTGTACGTGCTATCGTAACCCGAGACCTCCCCTTTGAGGACTTGCCTACCCCGGCACAGCTGCACCTAATGAACGAGGCCGTACTGGGCTTCCAGACCGACTTCGACGGTGACGGCACTAAGTTGCAGAAGCTGAACGCCAACCTGGCCAAGTCCTACGTATCGCTGAACACTGAGCACATTCGACAGATTAGCCTTAACGGGCTGGAGTCGATGTTTGCCCTGGTGAACAAGCAGCGTACATCACCTACCCAACGGCTGATGGGCCACCGCTCTGGTAGCGGAATTCCTGTGAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
735264de5f5b712af5d06d92a38113d972493542a68d0a7b79f335ef0b81aecf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9269
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic Characterization, Formulation and Efficacy in Planta of a Siphoviridae and Podoviridae Protection Cocktail against the Bacterial Plant Pathogens Pectobacterium spp Zaczek-Moczydlowska,M.A., Young,G.K., Trudgett,J., Fleming,C.C., Campbell,K. and O'Hanlon,R. 2020 32012814 GenBank