Protein

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Genbank accession
YP_013357135.1 [GenBank]
Protein name
hemagglutinin-like protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAISKRRLSFIIATLLRRNRERRHDEEDATPPQPQIPVASISGSPSAVEGQPLAFTVALSLAAGSALTIPLSYSGTASAGTYSGPASVVVPAGQTSASLSVSTVDNDVVDSSRTVVVTLQAGTGYTLGTSSATGTIANDDVAPEVPLMYAAQNSVIHNSTETRAFTGVAGYWDFYTASGSLSDIAVILTNWYATTAGNVVDIANALNFTEMSFEINGVIAPIRFSGQRAKTLASGEDDVVSDLVAASAFGLTSIPTNTLVRVKYKILHAAANSVMPQSNVTQGRPGYTLWYDPAVVTVSSVDVPGAYTVSGGANNTNYVSRPFGYQPRIVGKHINRTQPVYVGVGDSITQGLMDSASTEARTRGMGWIYRMLSISDTDFSSPIAYCNLGVASAPSTLTINHPKYRTAYKYADTATWFHCTNDFAENGTSATVATCQTRTNQGVGLIKTTTGSRVKKIIGAKLITRVTSTDSYKTAVNQTYRGTGWQPGDRVSQFNTWLETQVGVLFDDLIPWNSVRDETTPTLWKTDGVTANLTCQDGTHPSPNGYVLMGAEARAVRLRMEAAASARK
Physico‐chemical
properties
protein length:568 AA
molecular weight: 60377,88010 Da
isoelectric point:7,65925
aromaticity:0,07923
hydropathy:-0,10863

Domains

Domains [InterPro]
IPR038081
ATT
43–165
IPR038081 IPR036514
IPR038081
ATT
52–158
IPR038081 cd00229
DC_1250
STR
54–342
DC_1250 SSF52266
YP_013357135.1
1 568
Architecture
ATT
STR
ATT 43-165 | STR 166-556 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_013357135.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,7547
Central domain 144 384 242 0,4906
C-terminal 385 568 183 0,7938
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-384
C-terminal
385-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XAJ2
[NCBI] 		1775249 Uroviricota > Caudoviricetes > Caudoviricetes incertae sedis > Xajduovirus XAJ2 >
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_013357135.1 [NCBI]
Genbank nucleotide accession
NC_128954 [NCBI]
CDS location
range 4720 -> 6426
strand +
CDS
ATGGCAATTAGCAAAAGGCGGCTTTCATTTATTATTGCGACATTGCTTAGACGCAACCGTGAAAGACGGCATGACGAAGAAGACGCAACCCCACCTCAGCCGCAAATTCCCGTTGCATCTATTTCCGGCTCGCCTAGCGCCGTGGAAGGCCAGCCCCTGGCGTTCACCGTGGCCCTGTCGCTCGCTGCCGGCTCTGCCCTCACCATCCCCTTGTCGTACAGCGGCACGGCTTCCGCAGGCACGTACAGCGGCCCTGCTTCGGTGGTTGTGCCTGCCGGTCAAACTAGTGCATCGCTAAGTGTTTCGACTGTTGATAATGATGTGGTCGATTCGTCGCGCACAGTGGTTGTTACTTTGCAGGCTGGAACCGGCTACACGCTTGGAACTTCTTCGGCAACAGGTACAATTGCTAACGATGATGTTGCGCCTGAAGTTCCGCTAATGTATGCGGCGCAAAACAGCGTCATTCATAATAGTACAGAAACCCGCGCCTTTACTGGCGTTGCCGGTTATTGGGACTTTTATACGGCTTCGGGAAGCCTTAGCGATATAGCAGTAATTTTAACCAACTGGTATGCAACTACAGCAGGCAATGTTGTAGATATTGCAAATGCGCTTAATTTTACCGAAATGTCTTTTGAAATTAACGGCGTTATTGCTCCAATTCGCTTTTCGGGCCAAAGAGCAAAAACGCTTGCTTCCGGCGAAGATGATGTTGTTAGCGATTTGGTCGCCGCATCGGCTTTCGGTTTGACTTCCATTCCGACAAACACATTAGTTCGTGTTAAATATAAAATTTTGCATGCAGCCGCAAATTCTGTGATGCCTCAGTCAAACGTTACTCAAGGTAGACCCGGCTATACTTTGTGGTATGACCCGGCAGTCGTGACCGTTTCTAGTGTAGATGTTCCTGGCGCTTATACAGTTTCCGGCGGCGCGAATAACACAAATTATGTAAGTAGGCCATTTGGCTATCAGCCCCGCATTGTCGGTAAGCATATTAATCGCACGCAACCTGTTTATGTCGGTGTTGGCGATTCGATTACACAGGGCTTGATGGATAGTGCTAGCACCGAAGCCCGCACGCGCGGAATGGGCTGGATTTATAGAATGCTTAGCATTTCGGATACTGACTTCAGCAGCCCAATCGCTTATTGCAATTTGGGTGTTGCTTCGGCGCCATCAACATTAACAATAAATCATCCGAAATATAGAACTGCTTATAAATATGCAGATACGGCAACATGGTTTCACTGCACCAATGATTTTGCAGAAAATGGCACTTCTGCAACCGTCGCAACTTGCCAAACGCGAACTAATCAGGGTGTTGGTTTAATTAAGACTACTACAGGAAGTCGAGTTAAAAAGATCATTGGCGCCAAGTTAATAACTCGCGTAACTTCAACAGATTCGTATAAAACCGCTGTAAACCAAACTTATCGCGGTACGGGTTGGCAACCGGGCGATAGAGTTTCGCAATTTAATACATGGCTTGAAACTCAAGTTGGTGTGCTATTCGATGATTTGATTCCTTGGAATTCGGTTCGCGATGAAACAACGCCAACGCTTTGGAAAACTGACGGCGTTACGGCAAACTTGACTTGCCAAGATGGCACGCACCCAAGTCCAAACGGCTACGTCTTAATGGGTGCAGAAGCACGTGCGGTTAGACTTCGTATGGAAGCGGCCGCATCGGCGAGGAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
cda78791626f3e91f20320d6471a93429502b799b5dd7aa8c354450eeb614543
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9106
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages of Xanthomonas arboricola pv. juglandis: Characterization of two phages Domotor,D., Frank,T., Rakhely,G., Doffkay,Z., Schneider,G. and Kovacs,T. 2018-01-02 — GenBank