Protein

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Genbank accession
YP_011897873.1 [GenBank]
Protein name
receptor binding protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGFFAGKYSDGKTVLSLNTASGGDINAHKNPSTNTIFHSDMPFVLVESTYESALSSAGNGFYVCQMPSEIANLKSNDPGRVILTAIEVNGTHRGFLNGTQSQVGQFLSSTQADPFRSFASLSQTAGFAFGNSLASGTYSYNSSLGHEESIARSGTGGTVLHSTYHGVVRPGGGAPVGATVAETFKQLGYPIGSTSVPISSGNTYYWDPNWMAPMGAGKRGHNWFYVCNSNIRGYAGYKQTIPSNIVQHFSDGGYRYVCRGSTTKLVSQSANTKIVQDGYGVTPTKVIWYVLNLRYSNGGMSVSSNPFTGSDIIISPSNFTIKGVKLSTTGWKFINQNALGNLSSRADMEYIGVNAAHGGVFGDTTGRCEFVCSNKGSIWAPVNYSGTRAQLSIYKFSASKTWYVNSNNNTIGNENGVVWGPSSIPLRLLSGNVASAYIGNDITPTYPGTGNVYKSLATVGLGLPNNNSTVILTSEILSGNLNVAGLPVNTWNGSVFQVQGRKSQSYTGGDAIFHQILVLPPGKLVPFHTTSAYKYTPDSGAFSRNSFIYTIKNLGNGNAELGVILHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:586 AA
molecular weight: 62372,03580 Da
isoelectric point:9,37772
aromaticity:0,10751
hydropathy:-0,14266

Domains

Domains [InterPro]
IPR059609
RBD
1–586
IPR059609
YP_011897873.1
1 586
Architecture
RBD
RBD 1-586
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011897873.1
1 586
Domain Start End Length (AA) Confidence
N-terminal 1 51 51 0,0023
Central domain 52 250 200 0,2387
C-terminal 251 586 335 0,9214
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-51
Central
52-250
C-terminal
251-586

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_StyS-LmqsSP1
[NCBI] 		2749424 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus LmqsSP1
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011897873.1 [NCBI]
Genbank nucleotide accession
NC_104259 [NCBI]
CDS location
range 107686 -> 109446
strand +
CDS
ATGGGTTTTTTCGCTGGAAAATATAGTGATGGTAAAACTGTATTATCACTAAATACTGCTAGTGGTGGAGATATTAATGCTCATAAAAACCCTAGTACTAATACTATTTTTCATTCTGATATGCCCTTCGTATTAGTAGAAAGCACTTATGAGAGTGCATTAAGTAGTGCTGGGAATGGCTTCTATGTATGCCAGATGCCTTCTGAAATAGCTAACTTAAAGAGTAATGATCCTGGTAGAGTTATACTAACAGCTATAGAAGTTAATGGTACCCATCGTGGTTTTTTGAATGGTACTCAATCTCAAGTTGGGCAGTTTCTTTCTTCTACTCAGGCCGATCCTTTTAGATCATTTGCTAGCTTAAGTCAAACTGCTGGATTTGCTTTTGGTAATAGTCTAGCTTCAGGTACTTACTCCTATAATAGCTCTCTAGGGCATGAAGAATCTATAGCTAGAAGCGGTACTGGCGGTACTGTACTACATAGTACTTACCATGGTGTTGTAAGACCAGGTGGTGGTGCACCTGTAGGTGCTACTGTAGCTGAAACCTTCAAACAGCTAGGGTATCCTATAGGAAGTACTTCTGTTCCTATATCTTCAGGTAATACGTACTATTGGGATCCTAACTGGATGGCTCCAATGGGGGCTGGTAAACGTGGTCATAACTGGTTTTATGTATGTAATTCTAATATTAGGGGGTATGCTGGATACAAACAAACAATTCCTAGCAATATAGTACAGCACTTCAGTGATGGTGGGTATAGATATGTTTGTAGAGGTTCTACTACTAAGTTAGTAAGTCAATCAGCTAATACAAAAATAGTTCAAGATGGCTACGGAGTAACCCCTACAAAAGTTATATGGTATGTACTAAACCTAAGGTATTCTAATGGTGGTATGTCTGTTTCTAGTAACCCCTTCACAGGTTCTGACATAATAATTTCTCCGTCCAACTTTACTATTAAGGGAGTTAAGTTATCTACTACTGGTTGGAAGTTTATTAACCAGAATGCTCTTGGGAATTTAAGTTCTCGTGCTGATATGGAGTATATTGGAGTAAACGCTGCGCATGGTGGAGTGTTTGGGGATACTACTGGAAGATGTGAATTCGTATGCTCTAACAAAGGATCTATATGGGCACCAGTCAACTATAGTGGTACAAGAGCACAACTTAGTATTTATAAGTTCTCTGCTAGTAAGACCTGGTATGTAAACTCTAATAATAATACTATTGGTAATGAGAATGGTGTTGTCTGGGGACCTTCATCAATACCTTTACGCCTATTATCCGGTAATGTGGCTAGTGCCTATATTGGTAATGATATTACTCCGACCTATCCGGGCACTGGTAATGTTTATAAATCACTAGCAACAGTTGGACTAGGCCTACCAAATAATAACTCTACTGTTATACTAACTAGTGAAATATTATCGGGTAACCTTAATGTTGCTGGGTTACCAGTAAATACGTGGAATGGTAGTGTTTTTCAGGTGCAAGGAAGAAAATCACAAAGTTATACGGGAGGGGATGCTATATTTCACCAAATTTTAGTTCTTCCTCCTGGAAAATTAGTGCCTTTCCATACTACTTCTGCTTATAAATATACTCCAGATAGCGGAGCTTTTAGTAGAAACAGTTTTATATATACAATAAAAAATCTTGGTAATGGTAATGCAGAATTAGGTGTTATACTACACGTTAGTTTAGGTTCTGCAGTTTTCTTACCGAGACTACGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f87bb8b465060c11dfa0637d66c556a409cfccd3da4e7550203649771109f13d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2767
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Salmonella phage vB_StyS-LmqsSP1 Hammerl,J.A. and Kittler,S. 2003-08 — GenBank