Protein

View in Explore
Genbank accession
XUU32861.1 [GenBank]
Protein name
central tail fiber J
RBP type
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTIVYDVTGHKGGGGKQHTPQETPDSLHSLAKIRILLALGEGEFEGITSASELRQRVYLDGTPIQNADLSENFPGARVEFRPGTQHQDVIHGFSAVESEQSVGVKLENGTPWVRQINDTSLDAVRVRIGIPALYTSEDNGDLVGGRIDYKIVVYTDNADPREFTFAAVGKTMSLYERDHRIELPPNVNTGWRVEVHRITADSTSAKVVNDIRVQSITEIIDARLRYPLTALLFVEFDAKAFQNIPRVSIKCKGRKVLIPNNYDPINHTYSGDWDGTFKRAWTDNPAWHWYDICITERFGLGRRIKPQMLNRYALYQIAQRCDQLVSDGNGGREIRFKNDMYIQSQTDAWTVLKDLAAIFAGMTWWGNQMLNIVSDQPVAAVSHTITNASVIDGRFDYASGSQKTRYSTFAVAYGNPKNHYDDAIATGQRVELVRRHKINRLDITAIGCTRESEAQRRGHWALISNQLDQQVSFKVGMEGLFFIPGSVVAIADTNISGGFETRGGRLLSDPGTRIVLNTDSEITFRPGDKFLVRTDSGNVETREIASVNGNKVTLKTALDADPIPDQPFCVDGDDIQLQKFRITDLEYDDSTSTFSVRGIEYNDSKYDAVDNGARLDPGIFTQVPDGVMKGPESVTITPSQISSQGQLITNVDIVFPPVKDAVVYEIQWRRTSLQNMEIQWGNDWVNIPRTASNGAHIPNVFSGNYQARVRAIGMGEISSPWVSSAITPVEGRLGGLNAPIITNAISGLHQILWKWNHNNAATDISYTELEVRKTGETEWKFLTNVPYPGAEYAQTSLEFGIYQQLRARVADKIGNLSDWSAPFEGQVSDKVDEYMKGLDDEFLTSEDGKHFQEAINTIPQGIYEAMLTDAQQLFNARAEYKGIYAEIKVAYNVAADAHKAVAQLEKLIGTRLDDAEAAIHTLQTAQSTHEQAFAQYQQTVAAKFGEQEAAIQQVQTATADVAGALAEYKTQVAAQFGQQSAAIEQKMTSTFNHAGGSATYSLKAGVTYNGAYYDAGMQLSVVAEGGAVKSRIAFKADQFYIMHPSNGSLSSAFIVDGGAVYIDTARIKDATINFAQITDTLQSNNYDGYSRGWRLGKDGTFINLGTGNGGGMKQTNTQISVRDGNGVLRVQIGEITGSW
Physico‐chemical
properties
protein length:1139 AA
molecular weight: 125634,83620 Da
isoelectric point:5,38177
aromaticity:0,09043
hydropathy:-0,36198

Domains

Domains [InterPro]
DC_0014
STR
1–1139
DC_0014
IPR053171
Unmapped
7–857
IPR053171 IPR015406
IPR055385
ATT
96–222
IPR055385 IPR032876
XUU32861.1
1 1139
Architecture
STR
ATT
STR
ATT
STR
STR 1-95 | ATT 96-222 | STR 223-343 | ATT 344-495 | STR 496-1139
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XUU32861.1
1 1139
Domain Start End Length (AA) Confidence
N-terminal 1 509 509 0,9126
Central domain 510 1080 572 0,0416
C-terminal 1081 1139 58 0,8944
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-509
Central
510-1080
C-terminal
1081-1139

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_PS2
[NCBI] 		3423285 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XUU32861.1 [NCBI]
Genbank nucleotide accession
PV637039 [NCBI]
CDS location
range 17618 -> 21037
strand +
CDS
ATGACGATTGTATACGACGTCACAGGCCATAAAGGCGGCGGAGGCAAACAGCACACCCCACAGGAGACGCCTGATAGCCTGCATTCGCTGGCTAAAATCCGCATCTTGCTTGCGCTGGGTGAAGGGGAATTCGAAGGCATTACGAGCGCCAGCGAATTGCGGCAGCGTGTATATCTGGACGGCACTCCGATCCAGAACGCAGATCTGTCTGAAAACTTCCCCGGAGCGCGCGTGGAGTTCCGCCCCGGCACACAGCACCAGGATGTGATCCACGGATTTTCAGCGGTGGAAAGTGAGCAATCCGTCGGTGTAAAACTGGAAAACGGTACGCCGTGGGTGCGCCAGATTAACGACACCAGTCTTGACGCCGTGCGTGTTCGCATCGGCATTCCTGCCCTGTACACTAGCGAAGATAATGGCGACCTGGTGGGCGGGCGCATCGACTATAAGATCGTTGTGTATACGGATAACGCCGACCCGCGTGAGTTTACCTTCGCTGCCGTAGGTAAAACAATGTCGCTATACGAGCGCGATCACCGCATCGAGCTACCGCCGAACGTTAACACCGGCTGGCGCGTGGAGGTGCACCGCATAACGGCAGACTCCACATCGGCGAAAGTGGTTAATGATATCCGGGTGCAGTCCATCACCGAGATTATTGACGCCCGCCTGCGTTACCCGCTAACCGCGCTGTTGTTTGTGGAGTTCGACGCCAAAGCGTTCCAGAACATCCCGCGCGTGTCCATTAAGTGCAAAGGTCGCAAAGTTCTAATACCGAACAACTACGACCCGATCAATCATACCTATTCCGGGGACTGGGACGGCACGTTTAAACGCGCATGGACGGATAACCCTGCGTGGCACTGGTACGATATTTGTATTACTGAGCGCTTCGGCCTCGGTCGGCGTATCAAACCGCAAATGCTAAACCGATACGCGCTCTACCAGATTGCGCAGCGCTGCGATCAGTTGGTCAGCGACGGCAACGGTGGTCGAGAAATCCGCTTTAAGAATGATATGTACATTCAGTCACAGACGGATGCCTGGACAGTGCTTAAGGATTTAGCCGCCATCTTCGCCGGAATGACCTGGTGGGGTAACCAGATGTTGAATATTGTCAGTGACCAACCGGTCGCAGCAGTGTCGCACACTATCACCAACGCCTCGGTAATTGATGGTCGATTCGACTACGCATCTGGCAGCCAGAAAACTCGCTATTCCACATTTGCGGTAGCATACGGCAATCCGAAAAACCACTACGATGACGCCATCGCAACGGGCCAACGTGTTGAACTGGTACGCCGCCATAAGATTAACCGTCTTGATATCACGGCGATCGGCTGTACGCGTGAATCGGAGGCGCAACGCCGTGGGCACTGGGCGCTAATATCCAACCAGCTTGACCAGCAAGTTAGCTTCAAAGTTGGCATGGAAGGGTTATTCTTTATTCCTGGTAGCGTAGTCGCGATCGCAGATACTAATATTTCTGGCGGATTCGAGACTCGTGGCGGTCGCCTGTTGTCGGACCCTGGCACGCGTATCGTGCTGAACACAGACAGCGAAATCACATTCCGCCCTGGCGACAAGTTCCTGGTGCGCACCGATAGCGGTAACGTGGAGACTCGCGAGATCGCCAGCGTCAACGGCAACAAGGTCACGCTAAAAACCGCACTGGATGCCGACCCGATTCCAGACCAACCGTTTTGCGTTGATGGCGATGATATCCAGTTGCAAAAATTCCGCATCACCGATCTGGAGTATGACGACTCTACGAGCACTTTCTCGGTGCGCGGGATTGAATACAACGATAGCAAGTATGATGCCGTTGATAATGGCGCTCGCCTTGATCCGGGTATCTTCACGCAAGTGCCAGACGGTGTAATGAAGGGGCCAGAATCCGTTACCATTACCCCGTCGCAGATATCATCGCAAGGCCAGCTAATCACCAACGTGGATATTGTATTCCCGCCGGTGAAGGACGCCGTGGTGTATGAAATCCAGTGGCGACGCACTAGCTTGCAGAATATGGAAATCCAGTGGGGTAACGACTGGGTGAATATCCCGCGCACGGCATCGAATGGGGCGCACATCCCTAACGTGTTCTCAGGTAACTATCAGGCACGCGTCCGCGCAATTGGTATGGGCGAAATCTCATCCCCGTGGGTGTCTTCCGCAATCACGCCGGTGGAAGGTCGCCTCGGTGGGCTTAACGCACCAATCATCACAAACGCGATTTCTGGTCTGCACCAGATTCTATGGAAGTGGAATCACAACAACGCTGCGACTGATATCTCATACACCGAGCTTGAAGTGCGCAAGACGGGTGAAACGGAATGGAAATTCTTAACAAACGTCCCCTATCCTGGCGCGGAGTACGCGCAAACATCGCTGGAGTTCGGCATTTACCAGCAGTTGCGCGCCCGTGTAGCGGATAAAATCGGCAACCTGTCGGACTGGTCCGCCCCGTTCGAAGGCCAGGTGAGTGACAAAGTTGACGAGTACATGAAGGGGCTTGATGACGAGTTCTTGACTTCCGAGGATGGTAAACACTTCCAGGAAGCCATTAATACGATCCCGCAGGGTATTTACGAGGCGATGCTCACCGACGCGCAGCAATTGTTCAACGCCCGCGCCGAGTACAAGGGCATTTATGCGGAAATCAAGGTGGCGTATAACGTGGCGGCGGACGCCCACAAGGCGGTCGCTCAACTGGAGAAGTTGATCGGCACGCGACTTGACGATGCGGAAGCGGCGATCCACACGTTGCAGACAGCGCAAAGCACGCACGAGCAAGCCTTCGCCCAGTACCAGCAAACTGTTGCCGCTAAGTTCGGGGAGCAGGAAGCTGCCATCCAGCAGGTACAAACGGCAACGGCAGACGTAGCTGGCGCGCTGGCGGAGTACAAGACCCAGGTAGCGGCACAGTTCGGTCAGCAGTCTGCAGCTATCGAGCAGAAGATGACGTCCACGTTTAACCATGCTGGTGGCAGCGCCACATATAGCCTTAAGGCTGGCGTGACGTATAACGGGGCTTACTACGATGCCGGTATGCAGCTTTCCGTCGTTGCGGAAGGCGGCGCGGTTAAATCCCGCATCGCGTTCAAGGCGGACCAGTTCTATATCATGCACCCATCGAATGGGTCGCTTTCGTCCGCGTTTATTGTTGACGGCGGCGCGGTGTATATTGACACGGCACGCATCAAGGACGCGACTATCAACTTTGCACAGATCACGGACACGCTACAATCGAATAACTATGATGGCTACTCGCGTGGTTGGCGCTTAGGGAAAGACGGAACGTTTATCAACCTGGGAACCGGTAACGGTGGCGGGATGAAACAGACAAACACGCAAATCAGCGTTAGGGACGGAAACGGCGTTCTACGCGTGCAGATTGGTGAAATCACGGGTAGTTGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
5ceff5da3bd921e8dc735622080cfa3dbc471d30c76304ba231869f06b8d4b97
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8070
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and application of novel bacteriophage PS2 for controlling pathogenic Escherichia coli in different food matrices Zhang,S., Ryu,K., Kim,J.C. and Ahn,J. 2025 40602192 GenBank