Protein

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Genbank accession
YP_009618337.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,67
Protein sequence
MEKMMASFGEGYTKTQVISENNSIKYKFSFAPGSELSTPSLGYFTFQDERIGDQQDGVGINVREFNPAMNTISPKKTFNFLQEDSGAPNKAFLEYLATFPSTSKNLLVFTTFGDFNQSPSIEAKFKSFWSTLWPSKWHTDNYFVIYAGLYSIEANRMIAENVTYSDGVSRQEDLRPAIEYVYDKANDIGATGFSYRALEDFNEYVSSNDTIKRYPISDVLGVPMASVGIKVSDKMLWSFEFLQSTEMVPGGRNIRVSLRWLSNTGSLIKSENIDSNPANAGSWIKSEKNIEVPVGAERYTIVVSKTNGTNIEGEGGVRSMILTKVSRSLESSTSTSISVNGIRMNSAVSGDDPTLLKMAVPEVDSNGNPLPGEDLSGHVYSADWREFEKDI
Physico‐chemical
properties
protein length:391 AA
molecular weight: 43387,94630 Da
isoelectric point:4,88977
aromaticity:0,10997
hydropathy:-0,37980

Domains

Domains [InterPro]
DC_0912
STR
1–391
DC_0912
PS52031
LEC
22–197
PS52031
YP_009618337.1
1 391
Architecture
STR
STR 1-391
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009618337.1
1 391
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,3913
Central domain 147 380 235 0,5133
C-terminal 381 391 10 0,2298
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-380
C-terminal
381-391

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CF1 ERZ-2017
[NCBI] 		2267236 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Moonvirus
Host Citrobacter freundii
[NCBI] 		546 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009618337.1 [NCBI]
Genbank nucleotide accession
NC_042067 [NCBI]
CDS location
range 156857 -> 158032
strand +
CDS
ATGGAAAAAATGATGGCGAGTTTTGGTGAAGGATATACCAAAACTCAAGTTATTTCAGAAAATAATTCCATCAAATATAAGTTTTCATTCGCTCCGGGGTCGGAATTATCGACCCCTTCTTTAGGATATTTCACCTTTCAAGATGAACGCATTGGTGACCAACAAGATGGTGTTGGAATAAATGTCCGCGAATTCAATCCAGCGATGAATACTATATCACCAAAGAAAACTTTCAACTTTTTACAAGAAGATTCTGGAGCTCCAAATAAAGCATTTTTAGAATATCTTGCTACATTTCCTTCAACAAGCAAAAATCTTTTAGTCTTTACTACATTTGGTGATTTTAATCAATCTCCATCCATTGAAGCTAAATTTAAATCATTTTGGAGTACTTTATGGCCAAGTAAATGGCACACAGATAATTATTTTGTCATTTATGCCGGTCTTTATTCTATTGAAGCTAATAGAATGATTGCTGAAAACGTTACTTACTCAGATGGTGTATCTAGACAAGAAGACTTGCGTCCGGCTATTGAGTATGTGTATGATAAGGCAAATGATATAGGCGCAACCGGATTTTCTTATAGAGCATTAGAAGATTTTAATGAGTATGTTTCTTCAAATGATACGATAAAGCGTTATCCAATATCAGACGTTTTGGGAGTTCCTATGGCTTCAGTTGGAATAAAAGTTTCTGATAAAATGCTTTGGTCATTTGAATTCTTACAGAGCACAGAAATGGTTCCTGGCGGTAGAAATATACGAGTTAGCTTAAGATGGCTTTCAAATACTGGAAGTTTAATTAAAAGCGAAAATATAGATTCTAATCCAGCAAACGCAGGTAGTTGGATAAAAAGCGAAAAGAACATAGAAGTTCCAGTAGGCGCAGAACGATACACAATAGTTGTATCTAAAACTAATGGAACCAATATTGAAGGAGAAGGAGGAGTTCGTTCGATGATATTGACTAAAGTATCAAGATCATTAGAATCTTCTACTTCAACATCAATTTCTGTTAATGGTATAAGAATGAACTCAGCAGTATCTGGAGATGATCCAACTCTGCTTAAAATGGCTGTACCTGAAGTTGATTCAAATGGTAATCCATTACCAGGAGAAGATCTTTCTGGGCATGTTTATAGCGCAGATTGGCGGGAGTTTGAAAAAGATATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
57c51e82fb93f2451c255c2ff01f285904a6e31d7210afbb6cad418df390512e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6455
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparation Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank