Protein

View in Explore
Genbank accession
XYM48758.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MMAEEKKKVSELDFLSGLTGQEFVEVVARDTEGSYKNYRVLADKLRVGASAFDGAVKAGFVGTEEEWLETLVGKSAYQIAVDQGYEGTEEQWVSATNPLFEILPENAGMVLTVNELGLPEWKVIDLSFANLDKVDNTADADKPISRQQKKELDRKLYIKDAPSAVMSTLQQIGVVVSEDGKEVSFDEGRATEVSELLLQHRRGSALEAAAWTGKEGTFFVDLENKKLYVHDGVTVGGAQIGGLTAAEVQVIIDAGIAIDKVTGLVDALAKKADLDEDGKLKIEQLPELDIPTKVDEAAVIAGEDDTGFATAKGIHALLDAIGFTKDENGSWKLDPAVVA
Physico‐chemical
properties
protein length:339 AA
molecular weight: 36531,67430 Da
isoelectric point:4,47376
aromaticity:0,06490
hydropathy:-0,17080

Domains

Domains [InterPro]
DC_1725
STR
17–74
DC_1725 DC_1597 G3DSA:2.10.10.30
DC_1725
STR
72–99
DC_1725 IPR041352
G3DSA:2.10.10.30
ATT
200–243
G3DSA:2.10.10.30
XYM48758.1
1 339
Architecture
STR
STR
ATT
STR 17-99 | STR 106-174 | ATT 196-243 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiHQ
[NCBI] 		3402740 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM48758.1 [NCBI]
Genbank nucleotide accession
PV029745.1 [NCBI]
CDS location
range 158657 -> 159676
strand -
CDS
ATGATGGCTGAAGAAAAGAAAAAGGTTTCTGAACTCGATTTTCTGTCTGGTCTAACCGGACAGGAATTCGTAGAGGTTGTTGCTCGCGATACAGAAGGTTCTTATAAGAACTATCGTGTACTCGCAGATAAATTACGTGTAGGCGCTTCTGCTTTTGATGGCGCTGTCAAAGCTGGTTTTGTCGGTACTGAAGAAGAATGGTTAGAAACACTCGTTGGAAAATCTGCGTATCAAATCGCAGTTGATCAGGGTTATGAAGGCACTGAAGAACAATGGGTTTCTGCAACCAATCCTCTATTTGAGATCCTTCCAGAAAACGCTGGTATGGTACTCACTGTAAATGAACTAGGTCTTCCAGAGTGGAAAGTAATTGACCTTTCGTTTGCAAACTTAGATAAGGTCGATAATACAGCAGATGCTGATAAACCTATTTCTCGTCAGCAGAAGAAAGAACTTGATCGAAAGCTTTACATCAAAGATGCACCGAGTGCGGTTATGTCCACTCTACAACAAATCGGTGTAGTTGTTTCTGAAGATGGTAAAGAAGTATCGTTCGATGAAGGGCGTGCCACAGAAGTCAGTGAACTGCTTCTACAACATCGTCGCGGCTCTGCTCTAGAAGCGGCAGCTTGGACAGGCAAAGAAGGAACGTTCTTTGTAGATCTTGAGAATAAGAAGCTTTATGTTCACGATGGCGTTACTGTCGGTGGTGCTCAGATCGGTGGTCTAACTGCCGCTGAAGTACAAGTCATCATCGATGCAGGTATTGCTATCGATAAAGTTACTGGACTGGTTGATGCTCTTGCTAAGAAAGCAGATCTCGATGAGGACGGTAAACTGAAAATAGAACAGCTTCCTGAACTGGATATTCCGACTAAGGTTGATGAAGCTGCTGTCATTGCTGGTGAGGATGATACAGGCTTTGCTACTGCTAAAGGTATTCATGCACTTCTGGACGCCATTGGTTTTACCAAAGACGAGAATGGTTCTTGGAAACTCGATCCAGCCGTTGTGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
54a42a6fe6a8452be215e043e803b94390d194c326b00da0f8a377e9127fc7c7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7353
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of Phikzvirus realted Pseudomonas phage phiHQ: A Promising Candidate Against Uropathogens Qamar,H., Khan,M.S.I., Afzal,S. and Malik,K. 2022-09-14 — GenBank