Protein

View in Explore
Genbank accession
AVH85229.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MTSQEQYAEVVQWIGLNVRRYGQRNVHDSLVDRYGRYHIVKDGVDFTGTGLPFSKPSFLEINSKHLTFENYDFENSQYGGVGQISTAFMTLEFCKGDLEKVVRQTAPMRIDFLNISAKFGEFTNLVAATQVSDHVIFRVSRPNSSSSILEISTITNVAIFKGKQSCYFTDVFDLQNILIDNGFEDLV
Physico‐chemical
properties
protein length:187 AA
molecular weight: 21203,61590 Da
isoelectric point:5,33510
aromaticity:0,12299
hydropathy:-0,17754

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVH85229.1
1 187
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,0013
Central domain 44 176 134 0,0555
C-terminal 177 187 10 0,9897
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-176
C-terminal
177-187

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RsoM2USA
[NCBI] 		2070027 No lineage information
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVH85229.1 [NCBI]
Genbank nucleotide accession
MG752970 [NCBI]
CDS location
range 188617 -> 189180
strand +
CDS
ATGACGTCCCAGGAACAATACGCAGAAGTGGTGCAGTGGATAGGGTTGAACGTTCGTAGATATGGTCAAAGGAACGTTCACGATTCTTTGGTTGACCGGTATGGAAGATACCATATCGTAAAAGACGGAGTGGATTTCACAGGTACTGGTCTGCCGTTCAGTAAACCAAGTTTCCTAGAGATCAACTCTAAGCATTTAACGTTTGAGAACTATGACTTTGAGAATTCACAGTACGGTGGAGTAGGTCAGATCAGTACTGCCTTCATGACTTTAGAATTCTGCAAAGGTGATCTGGAGAAGGTGGTTAGACAGACCGCTCCGATGAGAATCGATTTCTTGAACATTAGTGCTAAGTTTGGAGAATTTACTAATTTGGTTGCTGCTACACAGGTGTCTGATCACGTGATCTTCAGAGTATCAAGACCTAATAGCAGTAGTTCCATATTAGAGATATCGACTATTACGAACGTGGCGATATTTAAAGGTAAGCAATCCTGCTACTTCACTGACGTATTTGATTTACAGAACATTTTAATAGATAACGGGTTTGAGGATTTGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
40f18354e8105f542ed3a6e0bef9a02989c7d456c3c15b4a4d6efa520ae54e98
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3710
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of RsoM2USA, the largest bacteriophage infecting plant pathogenic bacterium Ralstonia solanacearum Ahmad,A.A., Addy,H.S. and Huang,Q. 2021-09-27 — GenBank