Protein

View in Explore
Genbank accession
AWD90780.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,75
Protein sequence
MAVYIQGQEVLNIVVHVPNSAPTDLGEFRMAEQLAAKQPQITAQPVGGSIYDSQTLGLSIAANVFGSTAAYQWLVDGAPIQGANSTSFTFVPSGLGTFDVTCEIKAFGPMVTSEVASVTVEQTPVDLTWQVLPAGYGLPSNVSGLVGLNAIGSDGSLVVGATGMEGMRSTDKGLTWSYIGNGFGTGQTSGNIIAICVVGNVVVVGGIAGSNIGVASRSTNGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLGNGYAAVSNDLGATWSALPRWLNSGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSALPRYLGMPTNTTIVAIGVSNTAIVVGGNNGNCAISRNDGVTWSALPLNFGVPIGSGIRDRSIAGASNGTFLVGLSGSPISGNNGYLALSYDDGVTWQQPPRYLGIPNAGYGALVSTIANIDILTFLVGFTDKRGVRAVR
Physico‐chemical
properties
protein length:460 AA
molecular weight: 46801,16290 Da
isoelectric point:5,18107
aromaticity:0,07609
hydropathy:0,26957

Domains

Domains [InterPro]
DC_1032
ATT
1–81
DC_1032 IPR015943 IPR015943
SSF110296
STR
127–430
SSF110296
IPR058667
ENZ
174–429
IPR058667
cd15482
ENZ
214–435
cd15482
AWD90780.1
1 460
Architecture
ATT
STR
ATT 1-81 | STR 82-456 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWD90780.1
1 460
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,9927
Central domain 133 449 318 0,8403
C-terminal 450 460 10 0,1974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-449
C-terminal
450-460

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Rostov 6
[NCBI] 		2116688 Uroviricota > Caudoviricetes > Enhodamvirus >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWD90780.1 [NCBI]
Genbank nucleotide accession
MH105773 [NCBI]
CDS location
range 20805 -> 22187
strand +
CDS
ATGGCGGTATATATTCAAGGTCAAGAAGTGCTGAACATTGTTGTCCACGTGCCTAATTCTGCTCCGACCGATTTGGGTGAGTTTCGTATGGCAGAACAACTAGCAGCGAAGCAACCCCAAATCACAGCGCAGCCTGTGGGCGGTTCTATTTACGACTCGCAGACTTTGGGCTTGTCTATAGCGGCCAATGTGTTTGGCTCAACGGCTGCATACCAGTGGTTGGTCGACGGCGCTCCAATCCAAGGGGCTAACTCTACGTCCTTTACCTTCGTTCCGTCAGGGTTGGGTACTTTTGATGTGACGTGTGAGATAAAAGCTTTCGGCCCGATGGTCACGAGCGAAGTAGCCTCGGTCACAGTCGAGCAAACTCCTGTTGATTTGACTTGGCAAGTCTTGCCTGCAGGATATGGCCTACCGAGCAATGTCAGCGGACTCGTTGGGCTGAACGCCATTGGCTCTGACGGCTCCTTGGTGGTCGGAGCCACAGGCATGGAGGGCATGCGCAGCACGGACAAGGGACTGACGTGGTCATATATCGGCAACGGTTTTGGTACTGGACAGACATCAGGCAATATCATAGCTATCTGTGTGGTAGGGAATGTTGTGGTGGTGGGCGGAATCGCAGGCAGTAACATCGGAGTAGCGAGTCGGTCAACCAACGGGGGCGTTAGTTGGACCAAACTTCCCGATTTCCTAAACAGCGGAGCCACGGCCAGCGCCATCAACAAGATTTTGCACGTAGGCGGCAACAAGTTGATAGCGCTATTGGGGAATGGATACGCAGCCGTGAGCAACGATTTGGGAGCTACTTGGTCTGCGCTGCCTCGTTGGCTGAACAGCGGCGGCTCGGACAACAACACGTCCTTTTTCGATGGGGCGGTGACGGCAACAGGAGCCATAATCGCAGTAGGCCAAAATGGCTTTGCGTCAATAAGCCGAAACGGGGGCGTTACTTGGTCTGCTCTCCCTCGATACTTAGGCATGCCAACCAACACCACCATCGTCGCTATTGGTGTGAGCAACACTGCCATCGTAGTAGGAGGCAACAACGGCAACTGCGCTATCAGCAGGAATGATGGTGTCACTTGGTCTGCTCTGCCTCTGAATTTTGGTGTGCCAATAGGGTCAGGTATCCGCGACCGTTCAATTGCGGGAGCTAGCAACGGCACATTCTTAGTGGGGCTGAGTGGAAGCCCGATATCCGGCAACAACGGCTATTTGGCGTTGAGTTATGATGATGGCGTTACTTGGCAACAACCACCAAGATACCTAGGCATCCCAAATGCAGGATATGGCGCGTTGGTCAGCACTATCGCAAACATTGATATCTTAACTTTCTTGGTGGGCTTTACTGACAAGAGAGGAGTGAGAGCGGTGAGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2e842411a705cf6f36d291ec5fc36ffd3ff5e1e73269694302ca34f34dc4bf92
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8224
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Unpublished Vodopyanov,A.S., Pisanov,R.V., Ivanov,S.A., Gaevskaya,N.E., Tyurina,A.V. and Pogozhova,M.P. — — GenBank