Protein

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Genbank accession
QDJ96360.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAYNFQNFLTPTVTFDDIPQLENDTPVLGGPSGPSNAQAQTLLNRTEYLQLNKLHTYNSVAQMMQDTSALDNTYAMVLDPLVPENNHVYKFILNNWTLVADRLDAVLDNLLESNGSASIGYIRQPNTNTVNRTVAEKFGELISVLDYGAIGDGIANDTAAIQKAITDNGAGTIYFPAGTYLIDGNIALKSNQSYIGDGMYNTVLTLAQSNISNPSGINGLTSVGDLNNVTISHIGIKGNVTVQTTVDNTGQSLFGLSLRGGSVVNFTMEWCRVFNWGGQQLAAGRTGGGIIIGPNTGSNESISNIRIINNVIEDNGNAPGVYVGGVSTYVTSMVSIDVSDNIFTNSLPYASQNMIYVLGDTSLSADRLTVVGNQFNITEAIDAAIEINYANNVTILENVLVASSNGACTPILIRANCFNVNISDNVLDNVSTTTNISSDAIVLLNFVNGEIQTNVNISNNIIRNFGRNGIMVSNRSSNVMVAHNIIQGVGNRMEAAILVASSNNIVVKDNLISRCSNALQITSGDFPASRVDFLHNKLTDVGGTGKYIIDSPVLNVNVVFFVAMENTVYSIAAGTTGFISTPYAASTGNRVINNNLPVGLTLFNPSYKQYIERWVKMSASNGTLISASTYSFMQGPIEMIAYSPTINWSDPDAQKSSYTFGANLDGQLPDVEVGDTVFVSPTGDFTGMNYSAFVKDTNQVRIQITNVTSAALTMPAGNWYVTVIKRIV
Physico‐chemical
properties
protein length:728 AA
molecular weight: 78026,60310 Da
isoelectric point:4,55021
aromaticity:0,07830
hydropathy:0,03956

Domains

Domains [InterPro]
IPR012334
STR
99–532
IPR012334
IPR012334
STR
99–540
IPR012334
IPR011050
STR
140–438
IPR011050 IPR006626 IPR006626 IPR006626 IPR006626
IPR024535
ENZ
142–225
IPR024535 IPR006626 IPR006626 IPR006626 IPR011050
IPR006626
Unmapped
390–415
IPR006626 IPR006626
QDJ96360.1
1 728
Architecture
STR
STR 99-658 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDJ96360.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 157 157 0,9897
Central domain 158 603 447 0,9932
C-terminal 604 728 124 0,9528
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-157
Central
158-603
C-terminal
604-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp13
[NCBI] 		2591401 No lineage information
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ96360.1 [NCBI]
Genbank nucleotide accession
MN047793.1 [NCBI]
CDS location
range 87242 -> 89428
strand -
CDS
ATGGCTTACAATTTTCAAAACTTTCTAACACCTACAGTTACATTTGACGATATACCACAATTAGAGAATGACACCCCTGTGCTTGGTGGCCCTTCTGGCCCGTCTAATGCGCAAGCACAAACATTACTTAATAGAACTGAGTATCTACAATTAAACAAATTACACACATATAATAGTGTTGCACAAATGATGCAGGACACCAGCGCATTAGATAATACTTATGCGATGGTATTGGACCCCTTAGTTCCTGAAAATAATCATGTGTACAAATTTATACTTAATAATTGGACACTAGTTGCGGACAGATTAGATGCAGTATTGGATAATTTGTTAGAGTCTAATGGATCAGCGAGTATAGGGTATATAAGACAGCCAAATACTAACACAGTTAACAGAACTGTAGCCGAAAAATTTGGTGAATTAATTAGTGTGTTAGATTATGGTGCTATTGGTGATGGTATAGCTAATGATACTGCCGCCATTCAAAAAGCTATTACAGATAATGGTGCTGGAACTATTTACTTCCCTGCCGGAACATATTTGATCGATGGTAATATAGCATTAAAGTCAAACCAATCTTATATTGGTGATGGAATGTACAATACCGTATTGACTCTAGCACAGAGCAACATTAGTAACCCATCAGGAATTAATGGATTAACGAGCGTTGGTGATTTGAATAATGTCACTATATCACATATAGGAATTAAGGGAAATGTTACGGTTCAAACTACAGTAGATAATACTGGACAATCACTATTCGGATTATCATTACGAGGTGGTAGTGTTGTTAACTTTACTATGGAGTGGTGTCGAGTTTTTAATTGGGGAGGACAACAATTAGCAGCAGGCCGAACCGGTGGTGGAATTATTATCGGACCAAATACAGGAAGTAATGAGTCTATTAGTAATATTCGTATAATCAATAATGTTATAGAAGATAATGGAAATGCTCCTGGGGTTTATGTAGGAGGAGTTAGTACGTATGTAACATCCATGGTAAGTATTGATGTTAGTGATAATATCTTTACCAATAGTTTACCATATGCTTCACAAAATATGATATATGTATTAGGTGATACTTCGTTATCTGCGGATAGATTAACCGTAGTAGGTAATCAATTTAATATAACAGAAGCTATTGATGCGGCCATTGAAATAAACTACGCAAATAATGTAACTATATTAGAGAATGTATTAGTAGCCTCATCGAATGGTGCATGTACTCCAATACTAATACGTGCCAACTGTTTTAATGTTAACATATCTGATAATGTACTTGATAACGTCAGTACTACAACAAATATTTCTAGTGATGCTATTGTACTATTAAATTTTGTTAATGGAGAAATCCAGACAAACGTTAATATTTCTAATAATATTATTAGAAATTTTGGACGTAATGGGATTATGGTATCAAATAGAAGCTCCAATGTTATGGTAGCTCACAACATCATTCAAGGCGTTGGTAATAGAATGGAGGCCGCTATTTTAGTGGCATCCAGTAACAATATAGTAGTTAAAGATAATCTAATTTCTCGTTGTTCAAATGCATTACAAATAACATCTGGAGATTTTCCAGCTTCCCGTGTAGATTTTTTACATAATAAACTAACTGATGTAGGTGGAACTGGAAAATATATAATTGATAGCCCTGTACTTAATGTAAACGTGGTGTTTTTTGTTGCTATGGAGAACACCGTATATTCAATAGCCGCTGGAACCACTGGGTTTATTTCTACTCCATATGCTGCATCAACAGGTAATAGAGTTATTAACAATAACTTACCAGTTGGTTTAACCTTGTTCAATCCTTCATATAAACAGTATATTGAACGGTGGGTGAAAATGTCTGCATCAAACGGAACATTGATATCTGCTTCTACGTATAGCTTTATGCAAGGTCCTATAGAAATGATAGCATACAGCCCCACCATAAATTGGAGTGATCCTGATGCCCAAAAATCTTCTTATACGTTTGGTGCCAATCTTGACGGACAACTTCCTGATGTAGAAGTTGGAGATACAGTATTTGTATCTCCAACTGGAGATTTCACAGGAATGAATTATTCGGCATTCGTTAAAGATACTAATCAGGTAAGAATACAAATAACTAATGTCACCAGTGCAGCACTAACAATGCCAGCAGGTAATTGGTACGTTACAGTAATTAAACGTATTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a4d7b9aeea71395271581dddfaa7594187c9cb7ea14c8275ac17b7681d74ad02
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7869
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome sequence analysis of a novel phage Xoo-sp13 that infects Xanthomonas oryzae pv. oryzae Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-02-14 — GenBank