Protein

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Genbank accession
QCS36027.1 [GenBank]
Protein name
major capsid protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSSQNVRIGRPLPKRKPFDLTCTNNTSSDWGFYQPIFSRELKPNDSISIESKNYIRLAPMPQPTFSKGVHYYQFASFVPFEDLYKPFANLLSGQPYRPSSGPSYIPNEVPFITSKFLWALVFLNFSEFVVWQKDTSISTGVQARTLDMTDGMQVALSLIETYMSGTLYSFSATYAVDTVSPEELQGDPSLSPDNCDYVLVTDDGTYYCCFRLSRAGRNLRKILIGLGYKLDFLDDSVHRSFLPIAAYYKGWFDAMYPQRYTTWTDTHLYHILDYIMQRNSVNIPIMSDDIGVEVLSFFKDELIFTFHAYDPDYFSAQTGQVSLEKTTSVLDNTSPVNTQTSPVVVHNGQQAEIQASNAAALGGYQLWLIEKLTKFVNKNTIIGGRIKEYLIAHGLGQYVDNHNSDFLAIRSTPCSVFDVDQTAPTASSPLGNYAGKGIGSANQKWTYDANCFGQLIIYGAMVPLVGYFQGTNPLLNHTTRFSFYHAEFDALGMVSTRKSDIISNDSSNIAHIDVQNAFGLIPRYSEYKVNDINIINGDVSLGSRSSQLMGYTIDRWMPNYICDTLETSDRFAKIFYLKPANSANFSNGVAWRFCGRNSWMGNFNRIFYNQGKRFTLISGESDYLHDFTQDNFIIHHLLNIQLFSAMIPMRDSYFTDGDDSSAINVSKA
Physico‐chemical
properties
protein length:668 AA
molecular weight: 75422,01540 Da
isoelectric point:5,62447
aromaticity:0,13623
hydropathy:-0,22380

Domains

Domains [InterPro]
IPR037002
ATT
10–148
IPR037002 IPR037002 DC_2036
DC_1697
STR
131–386
DC_1697
QCS36027.1
1 668
Architecture
ATT
STR
ATT
RBD
ATT 10-148 | STR 149-229 | ATT 230-576 | RBD 588-668
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCS36027.1
1 668
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,8697
Central domain 171 369 200 0,1506
C-terminal 370 668 298 0,9062
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-369
C-terminal
370-668

Taxonomy

  Name Taxonomy ID Lineage
Phage Capybara microvirus Cap1_SP_94
[NCBI] 		2584800 Viruses > Monodnaviria > Sangervirae > Phixviricota > Malgrandaviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCS36027.1 [NCBI]
Genbank nucleotide accession
MK496702 [NCBI]
CDS location
range 1 -> 2007
strand +
CDS
ATGAGTTCTCAAAATGTTAGAATTGGCAGACCTTTGCCAAAGCGTAAGCCTTTCGATTTGACTTGTACTAATAACACTTCAAGTGATTGGGGTTTTTACCAACCCATATTTTCACGTGAATTGAAACCTAACGACTCTATCAGTATTGAGAGTAAGAATTACATTCGTCTTGCTCCCATGCCACAGCCTACTTTTTCGAAAGGTGTTCATTACTATCAGTTCGCTTCTTTCGTTCCTTTCGAGGACTTGTATAAGCCGTTTGCAAATCTTTTATCAGGTCAGCCTTATCGCCCCTCTTCAGGTCCTTCTTACATTCCTAATGAAGTTCCTTTTATAACTTCAAAGTTCCTTTGGGCTCTTGTTTTCCTGAATTTTAGCGAATTTGTTGTTTGGCAAAAAGATACATCTATTTCTACTGGTGTTCAAGCACGTACTTTAGACATGACTGATGGTATGCAAGTTGCTCTTTCTTTAATTGAGACTTATATGTCAGGCACTCTTTATTCTTTTTCAGCAACTTATGCGGTTGATACTGTTAGTCCTGAAGAATTACAAGGTGACCCTTCATTATCGCCTGACAATTGTGATTATGTACTTGTTACTGATGATGGTACTTATTATTGTTGTTTCCGCCTATCTCGTGCTGGTCGTAATCTTCGTAAGATTTTGATTGGTCTTGGGTATAAACTCGATTTTCTTGATGACTCTGTTCATCGTTCTTTTTTGCCTATTGCTGCCTATTATAAAGGATGGTTTGATGCAATGTATCCCCAACGCTATACTACGTGGACTGATACTCACTTGTATCATATTCTCGATTATATCATGCAACGTAATTCGGTTAATATCCCTATTATGTCGGATGATATTGGTGTTGAAGTTCTCTCTTTCTTTAAAGACGAACTTATCTTTACCTTCCATGCTTATGACCCTGATTATTTCAGCGCGCAGACTGGTCAGGTTTCTCTCGAAAAGACTACATCAGTTCTCGATAATACAAGTCCAGTAAATACTCAAACAAGCCCCGTTGTTGTTCATAATGGTCAACAAGCTGAGATACAAGCATCTAATGCTGCTGCTCTTGGTGGTTATCAGTTGTGGCTTATCGAAAAATTGACCAAGTTCGTCAACAAAAATACGATAATCGGAGGACGTATTAAGGAGTACCTCATCGCCCATGGGCTTGGTCAGTACGTTGACAATCATAATAGTGATTTCCTTGCTATTCGCTCTACTCCCTGCTCTGTTTTTGATGTTGACCAAACTGCTCCTACTGCATCGAGTCCTCTTGGTAACTATGCAGGTAAAGGTATTGGTTCTGCTAACCAAAAATGGACTTATGATGCGAATTGCTTCGGTCAACTTATAATATATGGTGCTATGGTGCCTTTGGTTGGTTATTTCCAAGGTACTAATCCATTGCTCAATCATACTACTCGCTTCTCTTTCTACCACGCAGAGTTTGATGCTTTGGGCATGGTATCAACTCGTAAGAGTGATATTATAAGTAATGACTCCTCTAATATTGCTCACATTGATGTACAAAATGCGTTTGGTCTTATTCCTCGATATAGTGAGTATAAAGTCAATGACATTAACATTATAAATGGTGATGTGTCTCTTGGTTCTCGCTCCTCTCAATTGATGGGTTACACAATTGACCGTTGGATGCCTAATTATATATGTGATACATTGGAGACTTCTGACAGATTTGCAAAAATATTTTATCTTAAACCTGCTAACTCTGCTAATTTCTCTAATGGTGTTGCTTGGCGCTTCTGTGGTAGAAATTCATGGATGGGTAATTTTAATCGCATTTTTTACAATCAAGGTAAAAGATTTACATTGATTTCAGGTGAGAGTGATTATCTTCATGATTTTACTCAAGATAATTTCATTATTCATCATTTGCTCAATATTCAGTTATTCTCGGCAATGATTCCGATGCGTGACTCTTATTTCACGGATGGTGATGATAGTTCTGCTATTAATGTTTCTAAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e8d928206ba1d682ab3c22101bb372ea242ff8719855bd0b0fab25c03bc79bab
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5048
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse ssDNA viruses associated with Capybara (Hydrochoerus hydrochaeris) in Brazil Fontenele,R.S., Lamas,N.S., Lacorte,C., Varsani,A. and Ribeiro,S.G. 2019-08-02 — GenBank